Factsheet for Solyc06g054640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77145.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT1G77145.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT1G77145.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT1G77145.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT1G77145.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT1G77145.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G77145.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G77145.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G77145.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G77145.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G77145.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT1G77145.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT1G77145.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT1G77145.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT1G77145.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT1G77145.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT1G77145.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079089	Potato	cytosol	67.57	98.68
VIT_18s0001g15610.t01	Wine grape	cytosol	52.25	42.03
GSMUA_Achr7P03040_001	Banana	nucleus	43.24	37.07
Zm00001d042631_P001	Maize	cytosol	30.18	31.46
HORVU3Hr1G091440.2	Barley	cytosol	33.78	30.86
TraesCS3A01G409700.1	Wheat	cytosol	33.33	30.58
TraesCS3B01G442800.1	Wheat	cytosol	32.88	30.42
TraesCS3D01G404300.1	Wheat	nucleus	33.33	30.08
AT1G77145.1	Thale cress	cytosol	34.23	29.23
Bra015689.1-P	Field mustard	nucleus	33.78	29.18
CDX87538	Canola	nucleus	33.78	29.18
CDX88346	Canola	nucleus	33.78	29.18
OQU87982	Sorghum	cytosol	35.14	27.76
AT1G77160.1	Thale cress	cytosol	32.88	27.76
CDX88344	Canola	cytosol	32.88	27.55
Bra015691.1-P	Field mustard	cytosol	31.53	26.62
Bra015690.1-P	Field mustard	nucleus	31.98	26.49
CDX87539	Canola	nucleus	31.98	26.49
CDX87540	Canola	cytosol	31.08	26.24
CDX88345	Canola	nucleus	31.53	26.12
Os01t0879600-00	Rice	plastid	34.68	25.5
Solyc06g083160.1.1	Tomato	nucleus	27.93	21.16
Solyc06g007580.1.1	Tomato	nucleus	27.93	20.74
Solyc09g057760.2.1	Tomato	nucleus	18.92	19.44
Solyc09g082980.2.1	Tomato	nucleus	34.68	19.35
Solyc06g053910.2.1	Tomato	cytosol, plastid	33.78	19.28
Solyc09g065760.2.1	Tomato	cytosol, plastid	36.49	18.62
Solyc11g012120.1.1	Tomato	cytosol	24.77	18.52
Solyc02g078150.2.1	Tomato	nucleus	25.23	18.18
Solyc03g006410.2.1	Tomato	cytosol	24.77	18.09
Solyc11g042630.1.1	Tomato	cytosol	22.97	17.96
Solyc06g005480.2.1	Tomato	cytosol	25.23	17.95
Solyc02g078160.2.1	Tomato	nucleus	23.87	17.55
Solyc07g053900.2.1	Tomato	cytosol	24.77	17.19

Protein Annotations

EnsemblPlants:Solyc06g054640.1.1	EnsemblPlantsGene:Solyc06g054640.1	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF14	PFAM:PF04720
TIGRFAMs:TIGR01615	UniParc:UPI0002765D71	UniProt:K4C6F0	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:+:37393281..37394600

Molecular Weight (calculated)

25689.8 Da

IEP (calculated)

5.386

GRAVY (calculated)

-0.352

Length

222 amino acids

Sequence
(BLAST)

001: MGICELEEDK LSQMVRDFIE MDCENFQVDE LVDHNNPTNT YLSLKDILEN VSDGEKEILG KILFYWRNNM EPKKLRQWIV NRLRIDEYEA SLCKTSWITS
101: SGSPSAFQFT GDYEYIDVMM KGISNGSERV RLIVDIDFRS QFELARPTQE YQELLNSLPS IFVGTEDKLN GIISLLCSAA KQSLKEKGLH VPPWRKASYM
201: HSKWLSHNCK KIALFAPTLH IV

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.