Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01469 | Sorghum | nucleus | 89.08 | 89.72 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 70.42 | 72.2 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 66.2 | 71.76 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 69.72 | 70.97 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 68.66 | 69.89 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 52.11 | 51.57 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 47.89 | 49.63 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 46.48 | 47.48 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 46.83 | 43.89 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 46.83 | 43.04 |
| CDY29898 | Canola | nucleus | 42.96 | 41.36 |
| Bra024209.1-P | Field mustard | nucleus | 42.96 | 41.36 |
| KRH25597 | Soybean | nucleus | 41.2 | 40.77 |
| CDY18979 | Canola | nucleus | 42.61 | 40.47 |
| CDX92863 | Canola | nucleus | 41.55 | 40.0 |
| CDY05782 | Canola | nucleus | 41.55 | 39.73 |
| AT4G32480.1 | Thale cress | nucleus | 40.14 | 39.72 |
| KRH10888 | Soybean | mitochondrion | 41.9 | 39.67 |
| CDY13861 | Canola | nucleus | 41.2 | 39.53 |
| Bra026262.1-P | Field mustard | nucleus | 41.55 | 39.46 |
| CDY49659 | Canola | nucleus | 41.55 | 39.46 |
| Bra036492.1-P | Field mustard | nucleus | 41.2 | 39.39 |
| CDX81975 | Canola | nucleus | 40.85 | 39.19 |
| Bra031136.1-P | Field mustard | nucleus | 40.49 | 39.12 |
| CDY31947 | Canola | nucleus | 40.85 | 39.06 |
| KRH21430 | Soybean | mitochondrion, nucleus | 41.2 | 38.74 |
| PGSC0003DMT400076442 | Potato | nucleus | 41.2 | 38.74 |
| PGSC0003DMT400047228 | Potato | nucleus | 38.38 | 38.38 |
| Solyc02g078150.2.1 | Tomato | nucleus | 40.85 | 37.66 |
| Solyc03g006410.2.1 | Tomato | cytosol | 40.14 | 37.5 |
| KRH20449 | Soybean | mitochondrion | 43.31 | 37.39 |
| KRH50053 | Soybean | mitochondrion | 42.25 | 37.27 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 39.79 | 36.93 |
| AT2G20670.1 | Thale cress | nucleus | 37.68 | 36.39 |
| Solyc02g078160.2.1 | Tomato | nucleus | 38.38 | 36.09 |
| Solyc07g053900.2.1 | Tomato | cytosol | 38.73 | 34.38 |
| Zm00001d027763_P001 | Maize | plastid | 29.23 | 27.67 |
| Zm00001d032955_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 28.87 | 27.33 |
| Zm00001d042631_P001 | Maize | cytosol | 19.01 | 25.35 |
| Zm00001d042376_P001 | Maize | cytosol | 25.7 | 24.83 |
| Zm00001d051691_P001 | Maize | cytosol | 25.7 | 23.25 |
| Zm00001d018962_P001 | Maize | mitochondrion, plastid | 31.34 | 23.24 |
| Zm00001d012069_P001 | Maize | mitochondrion | 23.24 | 22.92 |
| Zm00001d034444_P002 | Maize | plastid | 31.69 | 22.22 |
| Zm00001d007820_P002 | Maize | plastid | 31.34 | 22.19 |
| Zm00001d041955_P001 | Maize | plastid | 25.0 | 20.64 |
Protein Annotations
| EMBL:BT036174 | EnsemblPlants:Zm00001d043444_P001 | EnsemblPlants:Zm00001d043444_T001 | EnsemblPlantsGene:Zm00001d043444 | EntrezGene:100193809 | InterPro:PDDEXK-like |
| PANTHER:PTHR31579 | PANTHER:PTHR31579:SF2 | PFAM:PF04720 | ProteinID:ONM38068.1 | SEG:seg | TIGRFAMs:TIGR01615 |
| UniParc:UPI00017B7303 | UniProt:B4FGD6 | MapMan:35.2 | : | : | : |
Description
plant-specific domain TIGR01615 family protein expressed
Coordinates
chr3:+:200352833..200354707
Molecular Weight (calculated)
31260.0 Da
IEP (calculated)
6.665
GRAVY (calculated)
-0.455
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEETIDDS EMSLSNMVLG FLEDFERDER RPENDDDNNE EEGSSGGDTA ESKAFWQTQH LQLREALAKG SPAESRIRAD TEEAVKSMRA AACSCSCTGR
101: PAARDCRPCM LRHVADRLRD AGYDSALCKS KWTRSPDIPS GEHSYVEVAV QTRSGKSVRV VVELSFRAEF EVARASAGYR ALVTALPEVF VGRADRLRGV
201: VKVMCAAAKQ CMKDNNMHMG PWRKHKYMQA KWLGTPERGA AAVAAAETPV VAVPSVTVGS PEKQTKFRAS MLTFDFGRTA LEVA
101: PAARDCRPCM LRHVADRLRD AGYDSALCKS KWTRSPDIPS GEHSYVEVAV QTRSGKSVRV VVELSFRAEF EVARASAGYR ALVTALPEVF VGRADRLRGV
201: VKVMCAAAKQ CMKDNNMHMG PWRKHKYMQA KWLGTPERGA AAVAAAETPV VAVPSVTVGS PEKQTKFRAS MLTFDFGRTA LEVA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.