Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13861 | Canola | nucleus | 96.62 | 96.62 |
| CDY05782 | Canola | nucleus | 90.2 | 89.9 |
| CDY31947 | Canola | nucleus | 89.86 | 89.56 |
| AT2G20670.1 | Thale cress | nucleus | 85.81 | 86.39 |
| CDY29898 | Canola | nucleus | 72.64 | 72.88 |
| CDX92863 | Canola | nucleus | 72.3 | 72.54 |
| CDY18979 | Canola | nucleus | 70.27 | 69.57 |
| CDY49659 | Canola | nucleus | 69.93 | 69.23 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 51.35 | 50.16 |
| KRH25597 | Soybean | nucleus | 44.93 | 46.34 |
| PGSC0003DMT400047228 | Potato | nucleus | 42.57 | 44.37 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 38.85 | 43.89 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 38.85 | 41.97 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 40.54 | 41.81 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 39.19 | 41.58 |
| EES01469 | Sorghum | nucleus | 39.53 | 41.49 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 38.85 | 41.22 |
| Solyc07g053900.2.1 | Tomato | cytosol | 44.26 | 40.94 |
| Zm00001d043444_P001 | Maize | nucleus | 39.19 | 40.85 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 38.18 | 40.79 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 38.18 | 40.65 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.81 | 37.72 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.15 | 36.9 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.14 | 36.36 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 35.14 | 35.74 |
| Os05t0519300-01 | Rice | cytosol | 36.82 | 35.62 |
| EES19824 | Sorghum | cytosol | 34.8 | 34.22 |
| CDX87538 | Canola | nucleus | 19.59 | 22.57 |
| CDX88346 | Canola | nucleus | 19.59 | 22.57 |
| CDY52283 | Canola | nucleus | 19.26 | 20.21 |
| CDY15101 | Canola | nucleus | 18.92 | 20.14 |
| CDY35924 | Canola | nucleus | 20.27 | 20.0 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 20.27 | 20.0 |
| CDX88344 | Canola | cytosol | 17.57 | 19.62 |
| CDY07644 | Canola | cytosol | 19.93 | 19.6 |
| CDX92970 | Canola | cytosol | 21.96 | 19.52 |
| CDX88345 | Canola | nucleus | 17.57 | 19.4 |
| CDY31234 | Canola | cytosol | 19.26 | 19.39 |
| CDY21027 | Canola | cytosol | 19.26 | 19.32 |
| CDY24955 | Canola | cytosol | 19.59 | 19.21 |
| CDX87539 | Canola | nucleus | 17.23 | 19.03 |
| CDX87540 | Canola | cytosol | 16.89 | 19.01 |
| CDY53353 | Canola | mitochondrion | 18.58 | 18.77 |
| CDY29750 | Canola | nucleus, plastid | 22.3 | 18.64 |
| CDY18366 | Canola | cytosol | 18.58 | 18.33 |
| CDX93300 | Canola | cytosol | 18.58 | 18.33 |
| CDY30048 | Canola | mitochondrion | 18.24 | 18.31 |
| CDY16266 | Canola | nucleus | 21.96 | 18.21 |
| CDX94877 | Canola | cytosol | 21.28 | 18.16 |
| CDY07696 | Canola | cytosol | 18.92 | 17.95 |
| CDY34904 | Canola | nucleus | 18.24 | 17.88 |
| CDY60822 | Canola | nucleus | 17.91 | 17.73 |
| CDY14428 | Canola | cytosol | 18.58 | 17.68 |
| CDY10330 | Canola | cytosol | 21.62 | 17.49 |
| CDY10329 | Canola | plastid | 21.28 | 16.67 |
Protein Annotations
| EnsemblPlants:CDX81975 | EnsemblPlantsGene:GSBRNA2T00136950001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | PFAM:PF04720 |
| ProteinID:CDX81975 | ProteinID:CDX81975.1 | TIGRFAMs:TIGR01615 | UniParc:UPI0004EEE5A0 | MapMan:35.2 | : |
Description
BnaC08g36260D
Coordinates
chrLK031826:-:1756776..1758071
Molecular Weight (calculated)
33432.8 Da
IEP (calculated)
7.906
GRAVY (calculated)
-0.605
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFNLN GGSDTDDVDN NSNCTSEENK VFWHEQEQLL QGTLYRTSSI ETKIRQATKE ALKQVKSKGL
101: HCVCRRPVAG GCRSCLRGEI SRHLRDVAGY DCVISKSKWR SSQDIPAGEH EYIEIVDRSD SKKGEMRVVI ELSFRAEFEI AKCGEDYKRL ISRLPEVYVG
201: KTDRLRSLIK ILCIAGKKCL RDNKMHMGPW RKHKYMQAKW LGTCERSNSL GAAVTETTEP ENWVPRAKPR VSMLNYDGLL GSLSTGMGRH AAVTVV
101: HCVCRRPVAG GCRSCLRGEI SRHLRDVAGY DCVISKSKWR SSQDIPAGEH EYIEIVDRSD SKKGEMRVVI ELSFRAEFEI AKCGEDYKRL ISRLPEVYVG
201: KTDRLRSLIK ILCIAGKKCL RDNKMHMGPW RKHKYMQAKW LGTCERSNSL GAAVTETTEP ENWVPRAKPR VSMLNYDGLL GSLSTGMGRH AAVTVV
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.