Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35924 | Canola | nucleus | 94.33 | 94.33 |
| CDY60822 | Canola | nucleus | 83.0 | 83.28 |
| AT3G07350.1 | Thale cress | nucleus | 81.67 | 82.21 |
| CDY34904 | Canola | nucleus | 82.67 | 82.12 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 46.67 | 49.65 |
| CDY52283 | Canola | nucleus | 44.33 | 47.16 |
| Solyc06g007580.1.1 | Tomato | nucleus | 46.67 | 46.82 |
| PGSC0003DMT400051812 | Potato | nucleus | 45.67 | 46.13 |
| PGSC0003DMT400053173 | Potato | nucleus | 45.67 | 45.82 |
| CDY15101 | Canola | nucleus | 42.33 | 45.68 |
| Solyc06g083160.1.1 | Tomato | nucleus | 44.0 | 45.05 |
| KRH07392 | Soybean | nucleus | 43.0 | 43.14 |
| PGSC0003DMT400008686 | Potato | cytosol | 37.0 | 40.51 |
| KRH46613 | Soybean | mitochondrion, nucleus | 38.33 | 40.35 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 34.67 | 34.9 |
| Os01t0915000-01 | Rice | cytosol | 33.33 | 34.13 |
| Solyc09g057760.2.1 | Tomato | nucleus | 24.33 | 33.8 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 33.0 | 33.11 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 32.33 | 33.11 |
| Os11t0437600-01 | Rice | plastid | 33.67 | 33.01 |
| Zm00001d042376_P001 | Maize | cytosol | 32.33 | 32.99 |
| Zm00001d012069_P001 | Maize | mitochondrion | 31.67 | 32.99 |
| EES04096 | Sorghum | cytosol | 32.33 | 32.77 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 31.33 | 32.64 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 31.33 | 32.19 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 31.0 | 32.07 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 31.33 | 31.44 |
| TraesCS4A01G116900.1 | Wheat | plastid | 32.67 | 30.06 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 20.67 | 29.81 |
| CDY21027 | Canola | cytosol | 27.33 | 27.8 |
| CDY53353 | Canola | mitochondrion | 27.0 | 27.65 |
| CDY31234 | Canola | cytosol | 26.67 | 27.21 |
| CDY30048 | Canola | mitochondrion | 26.0 | 26.44 |
| CDY07644 | Canola | cytosol | 26.0 | 25.91 |
| CDY24955 | Canola | cytosol | 26.0 | 25.83 |
| HORVU3Hr1G093260.1 | Barley | plastid | 33.33 | 24.69 |
| CDY18366 | Canola | cytosol | 24.67 | 24.67 |
| CDX93300 | Canola | cytosol | 24.33 | 24.33 |
| CDX92970 | Canola | cytosol | 26.67 | 24.02 |
| CDX88344 | Canola | cytosol | 20.67 | 23.4 |
| CDX87538 | Canola | nucleus | 20.0 | 23.35 |
| CDX94877 | Canola | cytosol | 26.67 | 23.05 |
| CDY16266 | Canola | nucleus | 27.33 | 22.97 |
| CDX88346 | Canola | nucleus | 19.67 | 22.96 |
| CDY29750 | Canola | nucleus, plastid | 27.0 | 22.88 |
| CDY10330 | Canola | cytosol | 27.67 | 22.68 |
| CDY07696 | Canola | cytosol | 23.33 | 22.44 |
| CDX87540 | Canola | cytosol | 19.67 | 22.43 |
| CDX88345 | Canola | nucleus | 20.0 | 22.39 |
| CDY14428 | Canola | cytosol | 23.0 | 22.19 |
| CDX87539 | Canola | nucleus | 19.67 | 22.01 |
| CDY10329 | Canola | plastid | 26.67 | 21.16 |
| CDX81975 | Canola | nucleus | 20.0 | 20.27 |
| CDY05782 | Canola | nucleus | 19.67 | 19.87 |
| CDY13861 | Canola | nucleus | 19.33 | 19.59 |
| CDY31947 | Canola | nucleus | 19.33 | 19.53 |
| CDX92863 | Canola | nucleus | 19.0 | 19.32 |
| CDY29898 | Canola | nucleus | 19.0 | 19.32 |
| CDY49659 | Canola | nucleus | 18.33 | 18.39 |
| CDY18979 | Canola | nucleus | 18.33 | 18.39 |
Protein Annotations
| EnsemblPlants:CDY28060 | EnsemblPlantsGene:GSBRNA2T00039002001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | PFAM:PF04720 |
| ProteinID:CDY28060 | ProteinID:CDY28060.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EDC898 | UniProt:A0A078GNF9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g44620DBnaC05g44620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNF9]
Coordinates
chrLK032213:-:428369..429426
Molecular Weight (calculated)
33507.6 Da
IEP (calculated)
7.805
GRAVY (calculated)
-0.405
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSRAKRVT DPLADEVRAR LVGCSFSSGS EHTGDGIDNY DDDSPCLSDL VQGFLENEAN QNVNEEPRWC DSDSESYSDS DSERVDLPDF AEDIAKILRN
101: TLGEDNYGRM VLFHVARAME MLPSLGSDQE QRAVLRRKLM SLLRGFGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPAAA TSPQTVRYIV DLDFASRFQI
201: ARPTAQYSRV LQSLPAVFVG RGDDLKRILR LVCDAARLSL RSRGLTLPPW RKNRYLQTRW LGSYKRTVNL TPSSPAVNTV MCRAVGFDNA VGDRLFVQTR
101: TLGEDNYGRM VLFHVARAME MLPSLGSDQE QRAVLRRKLM SLLRGFGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPAAA TSPQTVRYIV DLDFASRFQI
201: ARPTAQYSRV LQSLPAVFVG RGDDLKRILR LVCDAARLSL RSRGLTLPPW RKNRYLQTRW LGSYKRTVNL TPSSPAVNTV MCRAVGFDNA VGDRLFVQTR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.