Factsheet for HORVU3Hr1G093260.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU1Hr1G086590.2
HORVU3Hr1G062030.1
HORVU3Hr1G073200.1
HORVU6Hr1G062870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	HORVU1Hr1G086590.2	AT1G52240.1	21798944
AT3G07350.1	HORVU3Hr1G062030.1	AT1G52240.1	21798944
AT3G07350.1	HORVU3Hr1G073200.1	AT1G52240.1	21798944
AT3G07350.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT3G07350.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G456400.1	Wheat	cytosol	60.99	85.76
TraesCS3D01G416400.1	Wheat	cytosol	61.48	85.27
TraesCS3A01G420900.1	Wheat	cytosol	60.49	84.48
Os01t0915000-01	Rice	cytosol	52.1	72.01
Zm00001d012069_P001	Maize	mitochondrion	49.88	70.14
Zm00001d042376_P001	Maize	cytosol	50.86	70.07
EES04096	Sorghum	cytosol	50.86	69.59
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	25.19	49.04
HORVU4Hr1G054810.1	Barley	mitochondrion	28.4	39.25
Bra040373.1-P	Field mustard	plastid	17.53	36.98
VIT_00s0337g00040.t01	Wine grape	cytosol	24.2	34.75
AT3G07350.1	Thale cress	nucleus	24.94	33.89
CDY35924	Canola	nucleus	24.94	33.67
CDY28060	Canola	cytosol, nucleus, plastid	24.69	33.33
Solyc06g007580.1.1	Tomato	nucleus	24.2	32.78
AT3G25240.1	Thale cress	cytosol	22.72	32.74
Bra029641.1-P	Field mustard	nucleus	24.2	32.67
KRH46613	Soybean	mitochondrion, nucleus	22.96	32.63
CDY60822	Canola	nucleus	23.7	32.11
PGSC0003DMT400053173	Potato	nucleus	23.7	32.11
CDY34904	Canola	nucleus	23.21	31.13
KRH07392	Soybean	nucleus	22.72	30.77
CDY52283	Canola	nucleus	21.23	30.5
Bra013223.1-P	Field mustard	nucleus	20.99	30.14
CDY15101	Canola	nucleus	20.49	29.86
Solyc06g083160.1.1	Tomato	nucleus	21.23	29.35
PGSC0003DMT400051812	Potato	nucleus	20.74	28.28
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	21.48	27.62
HORVU3Hr1G091440.2	Barley	cytosol	15.8	26.34
PGSC0003DMT400008686	Potato	cytosol	17.78	26.28
HORVU1Hr1G076120.1	Barley	nucleus	17.78	25.62
Solyc09g057760.2.1	Tomato	nucleus	12.84	24.07
HORVU3Hr1G071220.1	Barley	nucleus	14.81	22.9
HORVU5Hr1G105950.2	Barley	plastid	21.48	21.38
HORVU3Hr1G115940.1	Barley	plastid	19.26	18.44

Protein Annotations

EnsemblPlants:HORVU3Hr1G093260.1	EnsemblPlantsGene:HORVU3Hr1G093260	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF9	PFAM:PF04720
SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000B487276	UniProt:A0A287MBG6	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr3H:-:641474470..641475895

Molecular Weight (calculated)

43155.5 Da

IEP (calculated)

10.414

GRAVY (calculated)

-0.586

Length

405 amino acids

Sequence
(BLAST)

001: LTGSPRRPEE RNNGNQSARH PRVNPPNKPF AQPPYKAAPR DCQPLSSRHR TPQSPSSIPA TTRAHTRSRE RALARSLAGD DDDIDVQIQA GMAVYIRLDD
101: AVRARLRGDG GCTSSGSDHD ASACLSDLVQ AFLETDPAAG QGDEAPGPAP KGRDGYDSDD ADGAAEAAAS VRGLLDPPAA DDPFRIRLAA AVSAALDAEA
201: PLRGHGAAFR RAVMRRLRAA GYDAGVCTSR WETCGGLTAG TYEYIDVVVP GTSTAAAKAA KRSRYIVDAD FRAGLEVARA TAEYAVVVAA VPAKVVVARE
301: EAVGRAVRVA ADAARRSLRS HGLHVPPWRK SRYMLAKWLG PYKRSPSTSS ASSGGNAGGR RHRDGRHQVP RRRLLPVPGH HAGGEDQVAP RRPRKIDAID
401: VVERR

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.