Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT2G20670.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13861 | Canola | nucleus | 97.62 | 96.96 |
| Bra036492.1-P | Field mustard | nucleus | 90.82 | 89.9 |
| AT2G20670.1 | Thale cress | nucleus | 86.73 | 86.73 |
| Bra024209.1-P | Field mustard | nucleus | 72.45 | 72.2 |
| Bra026262.1-P | Field mustard | nucleus | 69.73 | 68.56 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 50.68 | 49.17 |
| KRH25597 | Soybean | nucleus | 44.22 | 45.3 |
| PGSC0003DMT400047228 | Potato | nucleus | 42.18 | 43.66 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 38.44 | 43.13 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 38.78 | 41.61 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 40.48 | 41.46 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 38.78 | 40.86 |
| Solyc07g053900.2.1 | Tomato | cytosol | 44.22 | 40.62 |
| Zm00001d043444_P001 | Maize | nucleus | 39.12 | 40.49 |
| EES01469 | Sorghum | nucleus | 38.78 | 40.43 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 38.1 | 40.29 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 38.1 | 40.14 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 37.41 | 39.71 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.71 | 37.37 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 35.71 | 36.21 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.03 | 36.01 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 35.03 | 35.4 |
| Os05t0519300-01 | Rice | cytosol | 36.39 | 34.97 |
| EES19824 | Sorghum | cytosol | 34.01 | 33.22 |
| Bra040373.1-P | Field mustard | plastid | 14.97 | 22.92 |
| Bra015689.1-P | Field mustard | nucleus | 19.73 | 22.57 |
| Bra000140.1-P | Field mustard | cytosol | 20.41 | 19.87 |
| Bra013223.1-P | Field mustard | nucleus | 19.05 | 19.86 |
| Bra001897.1-P | Field mustard | cytosol | 22.45 | 19.82 |
| Bra015691.1-P | Field mustard | cytosol | 17.69 | 19.77 |
| Bra029641.1-P | Field mustard | nucleus | 20.07 | 19.67 |
| Bra015690.1-P | Field mustard | nucleus | 17.35 | 19.03 |
| Bra016797.1-P | Field mustard | cytosol | 19.05 | 18.98 |
| Bra036877.1-P | Field mustard | cytosol, plastid | 22.79 | 18.93 |
| Bra017099.1-P | Field mustard | cytosol | 19.05 | 18.67 |
| Bra000098.1-P | Field mustard | cytosol | 19.39 | 18.45 |
| Bra019736.1-P | Field mustard | mitochondrion | 18.37 | 18.43 |
| Bra033896.1-P | Field mustard | cytosol | 21.77 | 17.44 |
Protein Annotations
| EnsemblPlants:Bra031136.1 | EnsemblPlants:Bra031136.1-P | EnsemblPlantsGene:Bra031136 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 |
| PFAM:PF04720 | TIGRFAMs:TIGR01615 | UniParc:UPI0002542900 | UniProt:M4EQR3 | MapMan:35.2 | : |
Description
AT2G20670 (E=1e-142) | unknown protein
Coordinates
chrA09:+:32332835..32334124
Molecular Weight (calculated)
33186.6 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.550
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFNLN GGSDIDDVDD NCNSEENKVF WQEQEQLLQG TLYRTSSIET KIRQATKEAL KQVKSKGLHC
101: VCLRPVAGGC RSCLRGEISR HLRDVAGYDC VISKSKWRSS QDIPAGEHEY IEIIDRSDSK KGEMRVVIEL SFRAEFEIAK CGEDYKRLIS RLPEVYVGKT
201: DRLRSLIKIL CIAGKKCLRD NKMHMGPWRK HKYMQAKWLG TCQRSNSLGA AVSETTEPEN WVPRAKPRVS MLNYDGLLGS LSTGIGRHAA VTVV
101: VCLRPVAGGC RSCLRGEISR HLRDVAGYDC VISKSKWRSS QDIPAGEHEY IEIIDRSDSK KGEMRVVIEL SFRAEFEIAK CGEDYKRLIS RLPEVYVGKT
201: DRLRSLIKIL CIAGKKCLRD NKMHMGPWRK HKYMQAKWLG TCQRSNSLGA AVSETTEPEN WVPRAKPRVS MLNYDGLLGS LSTGIGRHAA VTVV
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.