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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os05t0408900-03

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22970.1 Os05t0408900-03 AT4G15560.1 24104567
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G442200.1 Wheat plastid 74.57 80.53
TraesCS5D01G446400.1 Wheat plastid 75.31 80.05
TraesCS5A01G439200.1 Wheat plastid 74.07 80.0
EER93295 Sorghum plastid 75.31 77.61
Zm00001d034444_P002 Maize plastid 74.57 74.57
HORVU5Hr1G105950.2 Barley plastid 74.07 73.71
GSMUA_Achr4P21100_001 Banana cytosol, plastid 45.68 51.53
GSMUA_Achr8P20590_001 Banana plastid 45.68 50.96
GSMUA_Achr9P10660_001 Banana cytosol, plastid 47.41 50.26
Os03t0162500-01 Rice plastid 37.28 49.19
Os10t0417800-01 Rice plastid 35.56 47.84
GSMUA_Achr9P25590_001 Banana plastid 46.17 45.95
VIT_05s0020g04500.t01 Wine grape nucleus 41.23 43.26
PGSC0003DMT400041951 Potato cytosol 38.27 41.89
Bra036877.1-P Field mustard cytosol, plastid 36.3 41.53
AT2G38820.2 Thale cress cytosol 31.6 41.29
CDY29750 Canola nucleus, plastid 36.05 41.24
CDY16266 Canola nucleus 36.05 40.9
KRH34359 Soybean plastid 39.01 40.83
Bra001897.1-P Field mustard cytosol 33.33 40.54
CDX92970 Canola cytosol 33.33 40.54
KRG92439 Soybean plastid 39.26 40.46
CDY18366 Canola cytosol 29.88 40.33
AT4G14620.1 Thale cress cytosol 33.83 40.18
KRH69065 Soybean cytosol 36.3 40.16
Bra017099.1-P Field mustard cytosol 29.63 40.0
VIT_00s0179g00360.t01 Wine grape cytosol 38.77 39.55
KRH32089 Soybean cytosol 33.09 39.53
CDX93300 Canola cytosol 29.14 39.33
KRH71351 Soybean cytosol 34.81 39.28
Bra000098.1-P Field mustard cytosol 29.88 39.16
CDY07696 Canola cytosol 30.12 39.1
KRH31637 Soybean cytosol 36.79 38.9
Solyc06g053910.2.1 Tomato cytosol, plastid 37.28 38.82
CDX94877 Canola cytosol 33.09 38.62
CDY14428 Canola cytosol 29.63 38.59
AT3G54550.1 Thale cress plastid 27.41 38.54
KRG95606 Soybean cytosol 34.32 38.5
PGSC0003DMT400015576 Potato cytosol, plastid 37.53 38.38
Solyc09g082980.2.1 Tomato nucleus 37.53 38.19
Bra033896.1-P Field mustard cytosol 34.57 38.15
AT3G22970.1 Thale cress plastid 34.57 37.84
CDY10330 Canola cytosol 34.07 37.7
CDY10329 Canola plastid 32.35 34.66
PGSC0003DMT400049773 Potato nucleus 35.31 32.95
Solyc09g065760.2.1 Tomato cytosol, plastid 35.31 32.87
Os01t0915000-01 Rice cytosol 23.46 32.42
Os11t0437600-01 Rice plastid 22.22 29.41
Os05t0519300-01 Rice cytosol 20.99 27.78
Os01t0879600-00 Rice plastid 20.25 27.15
Os02t0720400-00 Rice nucleus 21.48 26.28
Os01t0973600-01 Rice plastid 21.23 25.52
Protein Annotations
EMBL:AK105257EnsemblPlants:Os03t0796600-01EnsemblPlantsGene:Os03g0796600EntrezGene:4334422InterPro:PDDEXK-likePANTHER:PTHR31579
PANTHER:PTHR31579:SF19PFAM:PF04720ProteinID:ABF99345.1ProteinID:BAF13470.1ProteinID:BAS86844.1RefSeq:XP_015628022.1
SEG:segTIGRFAMs:TIGR01615UniParc:UPI0000DB476FUniProt:Q10C31MapMan:35.2:
Description
Protein of unknown function DUF506, plant family protein. (Os03t0796600-01);Non-protein coding transcript. (Os03t0796600-02)
Coordinates
chr3:+:33169846..33172084
Molecular Weight (calculated)
43739.8 Da
IEP (calculated)
9.372
GRAVY (calculated)
-0.489
Length
405 amino acids
Sequence
(BLAST)
001: MRSMPFQLKN GHHHHGAMEG KPPVTPMQQQ QQHAPPPRVS RFRRLLVRVS ASERLAGDGK ERGEKEAEKV SASAAGGEVE AGSVGLDRMV LSFMEDSAAV
101: ERPQRGRCNC FNGSNYEESD DEEGFFLPSD HSSASAPAAA GDALESLKGL VQSASVAERN LLADASRIAE RCCKGSKGKA ECRRAVADGL RALGYDAAVC
201: RSRWEKTSSY PAGEHEYIDA VVGEEVRLIV EVDFRSEFEV ARSTKAYRAA LQALPPLFVG TPDRLGQIVA VVAEAARQSL KKKGLHFPPW RKPEYMRAKW
301: LSPHVRSGDK AAAAAKTVTS TTSATATPVS AASFSGAFEL LFDRKQSGEI PAAEKITVVV SPSPWRPTEE ASKKKPPPSP SPPQLWQQHQ QPPKAKVVTG
401: LAAVL
Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)
001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV
Arabidopsis Description
Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.