CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH11287
KRH16140
KRH20991
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	KRH02173	AT4G15560.1	24104567
AT3G22970.1	KRH11287	AT4G15560.1	24104567
AT3G22970.1	KRH16140	AT4G15560.1	24104567
AT3G22970.1	KRH20991	AT4G15560.1	24104567
AT3G22970.1	KRH50940	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34359	Soybean	plastid	91.6	93.02
KRH69065	Soybean	cytosol	60.81	65.3
VIT_05s0020g04500.t01	Wine grape	nucleus	63.36	64.51
KRH31637	Soybean	cytosol	62.34	63.97
Bra001897.1-P	Field mustard	cytosol	53.94	63.66
CDX92970	Canola	cytosol	53.69	63.36
CDX94877	Canola	cytosol	55.47	62.82
AT3G22970.1	Thale cress	plastid	57.76	61.35
CDY16266	Canola	nucleus	55.22	60.78
CDY29750	Canola	nucleus, plastid	54.71	60.73
Bra036877.1-P	Field mustard	cytosol, plastid	54.45	60.45
Bra033896.1-P	Field mustard	cytosol	56.23	60.22
PGSC0003DMT400041951	Potato	cytosol	55.98	59.46
PGSC0003DMT400015576	Potato	cytosol, plastid	59.8	59.34
AT4G14620.1	Thale cress	cytosol	51.4	59.24
Solyc09g082980.2.1	Tomato	nucleus	59.8	59.05
CDY10330	Canola	cytosol	54.96	59.02
Solyc06g053910.2.1	Tomato	cytosol, plastid	57.0	57.58
KRH71351	Soybean	cytosol	50.13	54.87
CDY10329	Canola	plastid	51.91	53.97
GSMUA_Achr3P15230_001	Banana	cytosol	45.55	53.12
KRH32089	Soybean	cytosol	45.8	53.1
GSMUA_Achr8P26930_001	Banana	cytosol	46.56	51.84
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	47.33	51.81
GSMUA_Achr8P20590_001	Banana	plastid	46.56	50.41
KRG95606	Soybean	cytosol	45.55	49.58
GSMUA_Achr8P04470_001	Banana	cytosol	46.31	49.46
GSMUA_Achr4P14880_001	Banana	mitochondrion	33.08	49.24
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	46.06	47.38
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.61	45.33
EER91615	Sorghum	mitochondrion	33.33	44.71
EER95459	Sorghum	plastid	32.82	43.14
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.1	43.09
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.1	43.09
Os03t0162500-01	Rice	plastid	33.33	42.67
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	34.1	42.54
Os10t0417800-01	Rice	plastid	32.57	42.52
TraesCS5A01G439200.1	Wheat	plastid	40.46	42.4
TraesCS5B01G442200.1	Wheat	plastid	40.46	42.4
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	33.84	42.22
GSMUA_Achr9P25590_001	Banana	plastid	43.51	42.01
Zm00001d027763_P001	Maize	plastid	32.06	42.0
TraesCS5D01G446400.1	Wheat	plastid	39.95	41.21
Zm00001d018962_P001	Maize	mitochondrion, plastid	39.44	40.47
Os03t0796600-01	Rice	cytosol, nucleus, plastid	40.46	39.26
Zm00001d034444_P002	Maize	plastid	40.2	39.01
EER93295	Sorghum	plastid	38.93	38.93
HORVU5Hr1G105950.2	Barley	plastid	39.95	38.57
Zm00001d007820_P002	Maize	plastid	37.4	36.66
KRH37828	Soybean	cytosol	12.47	32.45
EER98072	Sorghum	cytosol, plastid	37.91	31.43
KRH43403	Soybean	cytosol	21.12	31.32
KRH59552	Soybean	cytosol	20.61	29.78
KRH51155	Soybean	cytosol	20.1	26.6
KRH01670	Soybean	nucleus	20.1	25.65
KRH70457	Soybean	cytosol	19.85	25.32
KRH11519	Soybean	mitochondrion	20.1	25.32
KRH07392	Soybean	nucleus	18.58	24.41
KRH46613	Soybean	mitochondrion, nucleus	17.56	24.21
KRH36535	Soybean	endoplasmic reticulum, golgi	20.61	24.11
KRH25597	Soybean	nucleus	17.56	24.04
KRH21430	Soybean	mitochondrion, nucleus	17.81	23.18
KRH50053	Soybean	mitochondrion	18.32	22.36
KRH10888	Soybean	mitochondrion	16.79	22.0
KRH20449	Soybean	mitochondrion	18.07	21.58
KRH77753	Soybean	cytosol	14.76	21.32
KRH27801	Soybean	cytosol	14.76	21.09

Protein Annotations

EMBL:ACUP02012759	EnsemblPlants:KRG92439	EnsemblPlantsGene:GLYMA_20G211100	EntrezGene:100812376	InterPro:PDDEXK-like	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	PFAM:PF04720	ProteinID:KRG92439	ProteinID:KRG92439.1	SEG:seg	TIGRFAMs:TIGR01615
UniParc:UPI000233DC45	UniProt:I1NIB2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:44780097..44782385

Molecular Weight (calculated)

42856.7 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.402

Length

393 amino acids

Sequence
(BLAST)

001: MPPMKIQPID VDSQKLAVVR NDPVKPVLKS RLKRLFVFDR QFSNVLKTSS FSSEKPAAGE APQSNTKDGA AEFEPSSVCL DKMVQSFMEE SNEKPAPATA
101: KCGRNRCNCF NGNSNDSSDE ELDIFGDSIS SGSFSDASDA LKSLIPCASV VERNLLADTS KIVDKNSKVY KRKGDLRKIV TESLSSLGYD SSICTSKWDK
201: TPTYPAGEYE YIDVVVEGER LIIDIDFRSE FEIARSTGTY KAILQSLPFI FVGKSDRLCQ IVAAVSEAAK QSLKKKGMHV PPWRKAEYML VKWLSSSCTR
301: ANLTSSSAVN DSTENLSDGG GGGYDAAESE CGELELIFGE KTSPPKPETF PGVEKSFPPV ATPTWQPPAV RVRSVERGVK VVTGLASLLK DKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.