Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- peroxisome 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G255800.1 | |
| TraesCS1B01G266500.1 | |
| TraesCS1D01G255100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22970.1 | TraesCS1A01G255800.1 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | TraesCS1B01G266500.1 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | TraesCS1D01G255100.1 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 95.87 | 97.11 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 95.24 | 96.46 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 95.87 | 95.87 |
| EER95459 | Sorghum | plastid | 78.1 | 82.27 |
| Zm00001d027763_P001 | Maize | plastid | 77.78 | 81.67 |
| Os03t0162500-01 | Rice | plastid | 78.73 | 80.78 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 51.11 | 44.85 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 52.06 | 42.93 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 49.21 | 42.7 |
| Bra000098.1-P | Field mustard | cytosol | 37.78 | 38.51 |
| CDY07696 | Canola | cytosol | 38.1 | 38.46 |
| AT2G38820.2 | Thale cress | cytosol | 37.78 | 38.39 |
| CDY14428 | Canola | cytosol | 37.78 | 38.26 |
| TraesCS5A01G439200.1 | Wheat | plastid | 45.08 | 37.87 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 48.57 | 37.59 |
| CDX93300 | Canola | cytosol | 35.56 | 37.33 |
| KRH71351 | Soybean | cytosol | 41.9 | 36.77 |
| Bra017099.1-P | Field mustard | cytosol | 34.92 | 36.67 |
| CDY18366 | Canola | cytosol | 34.92 | 36.67 |
| KRG95606 | Soybean | cytosol | 41.27 | 36.01 |
| KRH32089 | Soybean | cytosol | 38.41 | 35.69 |
| Bra036877.1-P | Field mustard | cytosol, plastid | 40.0 | 35.59 |
| CDY29750 | Canola | nucleus, plastid | 39.68 | 35.31 |
| Bra033896.1-P | Field mustard | cytosol | 40.95 | 35.15 |
| Bra001897.1-P | Field mustard | cytosol | 37.14 | 35.14 |
| CDX92970 | Canola | cytosol | 37.14 | 35.14 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 44.13 | 35.01 |
| AT3G54550.1 | Thale cress | plastid | 31.75 | 34.72 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 42.54 | 34.72 |
| PGSC0003DMT400041951 | Potato | cytosol | 40.32 | 34.32 |
| CDY16266 | Canola | nucleus | 38.73 | 34.17 |
| KRH34359 | Soybean | plastid | 41.9 | 34.11 |
| KRG92439 | Soybean | plastid | 42.54 | 34.1 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 41.9 | 33.33 |
| CDY10330 | Canola | cytosol | 38.73 | 33.33 |
| CDX94877 | Canola | cytosol | 36.51 | 33.14 |
| Solyc09g082980.2.1 | Tomato | nucleus | 40.63 | 32.16 |
| CDY10329 | Canola | plastid | 38.41 | 32.01 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 39.37 | 31.88 |
| AT4G14620.1 | Thale cress | cytosol | 34.29 | 31.67 |
| AT3G22970.1 | Thale cress | plastid | 36.83 | 31.35 |
| KRH31637 | Soybean | cytosol | 38.1 | 31.33 |
| KRH69065 | Soybean | cytosol | 36.19 | 31.15 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 27.94 | 30.34 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 22.54 | 29.34 |
| PGSC0003DMT400049773 | Potato | nucleus | 39.05 | 28.34 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 25.08 | 28.32 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 38.1 | 27.59 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 24.44 | 26.46 |
| TraesCS4A01G116900.1 | Wheat | plastid | 26.35 | 25.46 |
| TraesCS6A01G283100.1 | Wheat | cytosol | 22.54 | 22.83 |
| TraesCS3A01G530700.1 | Wheat | plastid | 23.17 | 21.16 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G025500.1 | EnsemblPlantsGene:TraesCS4A01G025500 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF16 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:17675206..17676310
Molecular Weight (calculated)
33687.7 Da
IEP (calculated)
7.470
GRAVY (calculated)
-0.475
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPATAQIDP SPSPSPAALA KSRLKRLFER QVLRVSPAER LPPVSAGGDK DREKDDLEPS SVCLDGMVRS FLEDGGGAVG ERAPAARCCN CFNGGDASDD
101: EDGPAAAEAS AISDAAETIK GLVHCASLRE RNLLADVSTL VERHRAAGAR KRDLLRLLAA SLRAMGHDAA LCLSRWDKSS SHPAGEHAYV DVLLPAGSER
201: GDRERVLVDV DFRSQFEVAR PTKAYRAVLQ RLPSAFVGKE DRLRLLVAAA ADSSRASLKK RGLHLPPWRK PEYMRAKWLS PYEREAPPPA PDGPASASAS
301: ELADTGEGGE DGAKA
101: EDGPAAAEAS AISDAAETIK GLVHCASLRE RNLLADVSTL VERHRAAGAR KRDLLRLLAA SLRAMGHDAA LCLSRWDKSS SHPAGEHAYV DVLLPAGSER
201: GDRERVLVDV DFRSQFEVAR PTKAYRAVLQ RLPSAFVGKE DRLRLLVAAA ADSSRASLKK RGLHLPPWRK PEYMRAKWLS PYEREAPPPA PDGPASASAS
301: ELADTGEGGE DGAKA
001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV
Arabidopsis Description
Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.