Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24830.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT3G24830.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT3G24830.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25477 | Soybean | nucleus | 41.67 | 32.79 |
| CDY19938 | Canola | mitochondrion | 70.83 | 29.82 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 79.17 | 27.14 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 75.0 | 25.71 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 97.92 | 22.82 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 79.17 | 21.11 |
| GSMUA_Achr10P... | Banana | mitochondrion | 79.17 | 21.11 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 77.08 | 20.56 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 79.17 | 18.45 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 79.17 | 18.45 |
| Solyc05g053670.2.1 | Tomato | nucleus | 77.08 | 17.96 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 77.08 | 17.96 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 77.08 | 17.96 |
| AT5G48760.1 | Thale cress | cytosol | 77.08 | 17.96 |
| Bra036669.1-P | Field mustard | cytosol | 75.0 | 17.48 |
| CDY39786 | Canola | cytosol | 75.0 | 17.48 |
| CDY03292 | Canola | cytosol | 75.0 | 17.48 |
| CDX93039 | Canola | cytosol | 72.92 | 16.99 |
| CDY15113 | Canola | cytosol | 72.92 | 16.99 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 72.92 | 16.99 |
| Bra013239.1-P | Field mustard | cytosol | 72.92 | 16.99 |
| AT3G07110.2 | Thale cress | cytosol | 72.92 | 16.91 |
| AT3G24830.1 | Thale cress | cytosol | 70.83 | 16.5 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 70.83 | 16.5 |
| AT4G13170.1 | Thale cress | cytosol | 70.83 | 16.5 |
| CDY52083 | Canola | cytosol | 70.83 | 16.5 |
| CDY33947 | Canola | cytosol | 70.83 | 16.5 |
| CDY05663 | Canola | cytosol | 70.83 | 16.5 |
| CDY00046 | Canola | cytosol | 70.83 | 16.5 |
| CDX86281 | Canola | cytosol | 70.83 | 16.5 |
| CDX85362 | Canola | cytosol | 70.83 | 16.5 |
| CDX77383 | Canola | cytosol | 70.83 | 16.5 |
| Bra036161.1-P | Field mustard | cytosol | 70.83 | 16.5 |
| Solyc09g091740.2.1 | Tomato | nucleus | 72.92 | 16.2 |
| Bra020681.1-P | Field mustard | cytosol | 68.75 | 16.02 |
| Bra015088.1-P | Field mustard | cytosol | 68.75 | 16.02 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 64.58 | 15.42 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 16.67 | 6.96 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 0.0 | 0.0 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 0.0 | 0.0 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G063900.1 | EnsemblPlantsGene:HORVU2Hr1G063900 | UniParc:UPI000B45FF94 | UniProt:A0A287I794 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr2H:-:432836455..432836965
Molecular Weight (calculated)
5627.9 Da
IEP (calculated)
10.366
GRAVY (calculated)
-1.129
Length
48 amino acids
Sequence
(BLAST)
(BLAST)
1: QELEEKRKEK AKVSYDRRKQ LAKLRVKAEK AAEEKLGSQL DILAPIKY
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.