Factsheet for PGSC0003DMT400076290

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019917	Potato	mitochondrion	97.57	97.57
PGSC0003DMT400040760	Potato	mitochondrion, plastid	97.09	97.09
Solyc09g091740.2.1	Tomato	nucleus	99.03	94.44
PGSC0003DMT400096774	Potato	mitochondrion, plastid	91.26	93.53
VIT_15s0021g00760.t01	Wine grape	mitochondrion	50.0	89.57
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	88.83	88.83
VIT_07s0005g06490.t01	Wine grape	cytosol	88.35	88.35
EES17613	Sorghum	mitochondrion	88.35	88.35
CDY52083	Canola	cytosol	87.86	87.86
EER93429	Sorghum	cytosol	87.86	87.86
CDX77383	Canola	cytosol	87.86	87.86
CDY03292	Canola	cytosol	87.38	87.38
AT5G48760.1	Thale cress	cytosol	87.38	87.38
CDY39786	Canola	cytosol	87.38	87.38
Bra036669.1-P	Field mustard	cytosol	87.38	87.38
Bra015088.1-P	Field mustard	cytosol	87.38	87.38
CDX93039	Canola	cytosol	86.89	86.89
CDY15113	Canola	cytosol	86.89	86.89
Bra013239.1-P	Field mustard	cytosol	86.89	86.89
AT3G24830.1	Thale cress	cytosol	86.41	86.41
Zm00001d013252_P001	Maize	plasma membrane	86.41	86.41
CDX86281	Canola	cytosol	85.92	85.92
AT4G13170.1	Thale cress	cytosol	85.92	85.92
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.92	85.92
TraesCS5D01G402800.1	Wheat	cytosol	85.92	85.92
Bra036161.1-P	Field mustard	cytosol	85.92	85.92
CDY33947	Canola	cytosol	85.92	85.92
CDY05663	Canola	cytosol	85.92	85.92
CDY00046	Canola	cytosol	85.92	85.92
CDX85362	Canola	cytosol	85.92	85.92
GSMUA_Achr10P...	Banana	mitochondrion	74.76	85.56
AT3G07110.2	Thale cress	cytosol	85.92	85.51
Bra020681.1-P	Field mustard	cytosol	85.44	85.44
TraesCS5B01G397800.1	Wheat	cytosol	85.44	85.44
KRH36792	Soybean	nucleus	85.44	85.44
KRH46742	Soybean	nucleus	85.44	85.44
GSMUA_Achr3P17910_001	Banana	mitochondrion	74.27	85.0
GSMUA_Achr6P15590_001	Banana	mitochondrion	74.27	85.0
KRH07489	Soybean	nucleus	84.95	84.95
GSMUA_Achr6P08790_001	Banana	cytosol	57.28	84.29
GSMUA_Achr6P23390_001	Banana	cytosol	57.28	84.29
HORVU2Hr1G063880.5	Barley	mitochondrion	83.98	83.98
KRH46743	Soybean	cytosol	83.5	83.5
TraesCS2B01G281300.1	Wheat	mitochondrion	83.01	83.01
KRH11781	Soybean	nucleus	82.52	82.52
TraesCS2A01G260700.1	Wheat	golgi, unclear	82.04	82.04
TraesCS2D01G263000.1	Wheat	mitochondrion	80.58	80.58
GSMUA_Achr3P13700_001	Banana	mitochondrion	42.23	80.56
CDY19938	Canola	mitochondrion	42.72	77.19
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	17.96	77.08
Zm00001d034059_P006	Maize	cytosol	87.86	76.05
Os11t0425800-01	Rice	mitochondrion	25.73	75.71
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	10.68	66.67
Os03t0755700-00	Rice	nucleus	40.29	62.88

Protein Annotations

EntrezGene:102586211	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	InterPro:IPR036899	UniProt:M1CWH9	HAMAP:MF_01366	PFAM:PF00572	EnsemblPlantsGene:PGSC0003DMG400029659
PGSC:PGSC0003DMG400029659	EnsemblPlants:PGSC0003DMT400076290	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
UniParc:UPI000295B876	RefSeq:XP_006360354.1	:	:	:	:

Description

60S ribosomal protein L13a [Source:PGSC_GENE;Acc:PGSC0003DMG400029659]

Coordinates

chr9:-:58657642..58660281

Molecular Weight (calculated)

23532.5 Da

IEP (calculated)

11.344

GRAVY (calculated)

-0.383

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGISAK RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKVY EGVPPPYDKI KRMVIPDALK VLRLRAGHKY CLLGKLSSEV GWNHYDTIRD LENKRKERAQ VTYERRKQLA KLRVKAEKAA EEKLGPQLAV
201: IAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.