Factsheet for Zm00001d013252_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G24830.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G24830.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G24830.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G24830.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G24830.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G24830.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G24830.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17613	Sorghum	mitochondrion	96.6	96.6
TraesCS5D01G402800.1	Wheat	cytosol	90.29	90.29
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	90.29	90.29
TraesCS5B01G397800.1	Wheat	cytosol	89.81	89.81
VIT_15s0021g00760.t01	Wine grape	mitochondrion	49.03	87.83
PGSC0003DMT400019917	Potato	mitochondrion	86.89	86.89
PGSC0003DMT400040760	Potato	mitochondrion, plastid	86.89	86.89
Solyc12g098330.1.1	Tomato	nucleus, unclear	86.89	86.89
Solyc05g053670.2.1	Tomato	nucleus	86.89	86.89
GSMUA_Achr6P15590_001	Banana	mitochondrion	75.73	86.67
GSMUA_Achr10P...	Banana	mitochondrion	75.73	86.67
GSMUA_Achr6P23390_001	Banana	cytosol	58.74	86.43
PGSC0003DMT400076290	Potato	cytosol, plastid	86.41	86.41
GSMUA_Achr3P17910_001	Banana	mitochondrion	75.24	86.11
CDY03292	Canola	cytosol	85.44	85.44
CDY39786	Canola	cytosol	85.44	85.44
Bra036669.1-P	Field mustard	cytosol	85.44	85.44
VIT_07s0005g06490.t01	Wine grape	cytosol	85.44	85.44
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	84.47	84.47
GSMUA_Achr6P08790_001	Banana	cytosol	57.28	84.29
PGSC0003DMT400096774	Potato	mitochondrion, plastid	82.04	84.08
AT5G48760.1	Thale cress	cytosol	83.98	83.98
CDY15113	Canola	cytosol	83.5	83.5
CDX93039	Canola	cytosol	83.5	83.5
CDY52083	Canola	cytosol	83.5	83.5
CDX77383	Canola	cytosol	83.5	83.5
Bra013239.1-P	Field mustard	cytosol	83.5	83.5
Zm00001d034059_P006	Maize	cytosol	96.12	83.19
AT3G24830.1	Thale cress	cytosol	83.01	83.01
Bra015088.1-P	Field mustard	cytosol	83.01	83.01
CDY33947	Canola	cytosol	82.52	82.52
Bra036161.1-P	Field mustard	cytosol	82.52	82.52
CDY05663	Canola	cytosol	82.52	82.52
CDY00046	Canola	cytosol	82.52	82.52
CDX86281	Canola	cytosol	82.52	82.52
CDX85362	Canola	cytosol	82.52	82.52
AT4G13170.1	Thale cress	cytosol	82.04	82.04
Bra020681.1-P	Field mustard	cytosol	82.04	82.04
Solyc09g091740.2.1	Tomato	nucleus	85.44	81.48
Os11t0425800-01	Rice	mitochondrion	27.67	81.43
AT3G07110.2	Thale cress	cytosol	81.07	80.68
GSMUA_Achr3P13700_001	Banana	mitochondrion	41.26	78.7
CDY19938	Canola	mitochondrion	40.78	73.68
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	10.68	66.67
Os03t0755700-00	Rice	nucleus	41.75	65.15
KRH25477	Soybean	nucleus	17.48	59.02

Protein Annotations

EntrezGene:100283655	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	ProteinID:AQK62769.1	EMBL:BT061130	UniProt:C0HFM4
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR036899	HAMAP:MF_01366	PFAM:PF00572
PIRSF:PIRSF002181	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI0001948873	EnsemblPlantsGene:Zm00001d013252	EnsemblPlants:Zm00001d013252_P001	EnsemblPlants:Zm00001d013252_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L13a-1

Coordinates

chr5:-:7138252..7143092

Molecular Weight (calculated)

23630.5 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.471

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGVCAK RIVVDARHHM LGRLSSIIAK ELLNGQKVVV VRCEEICMSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: EAALARLKTY EGVPPPYDKT KRLVIPDALK VLRLQPGHKY CLLGELSKEV GWNYHDTIRE LEEKRKEKAK VAYERRKQLA KLRLKAEATA EEKLGSQLDI
201: LTPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.