CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	CDY42827	AT2G42580.1	19000166
AT3G24830.1	CDY51514	AT2G42580.1	19000166
AT3G24830.1	CDY55390	AT2G42580.1	19000166
AT3G24830.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036669.1-P	Field mustard	cytosol	100.0	100.0
CDY03292	Canola	cytosol	100.0	100.0
CDX77383	Canola	cytosol	98.06	98.06
CDY52083	Canola	cytosol	98.06	98.06
CDX93039	Canola	cytosol	97.09	97.09
CDY15113	Canola	cytosol	97.09	97.09
AT3G24830.1	Thale cress	cytosol	96.12	96.12
CDX85362	Canola	cytosol	93.69	93.69
CDX86281	Canola	cytosol	93.69	93.69
CDY00046	Canola	cytosol	93.69	93.69
CDY05663	Canola	cytosol	93.69	93.69
CDY33947	Canola	cytosol	93.69	93.69
KRH36792	Soybean	nucleus	90.29	90.29
KRH07489	Soybean	nucleus	89.81	89.81
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	89.32	89.32
VIT_07s0005g06490.t01	Wine grape	cytosol	89.32	89.32
PGSC0003DMT400019917	Potato	mitochondrion	88.35	88.35
Solyc12g098330.1.1	Tomato	nucleus, unclear	87.86	87.86
PGSC0003DMT400040760	Potato	mitochondrion, plastid	87.86	87.86
KRH46742	Soybean	nucleus	87.86	87.86
KRH11781	Soybean	nucleus	87.86	87.86
VIT_15s0021g00760.t01	Wine grape	mitochondrion	49.03	87.83
Solyc05g053670.2.1	Tomato	nucleus	87.38	87.38
PGSC0003DMT400076290	Potato	cytosol, plastid	87.38	87.38
KRH46743	Soybean	cytosol	86.41	86.41
EER93429	Sorghum	cytosol	85.92	85.92
HORVU2Hr1G063880.5	Barley	mitochondrion	85.44	85.44
Zm00001d013252_P001	Maize	plasma membrane	85.44	85.44
EES17613	Sorghum	mitochondrion	85.44	85.44
CDY19938	Canola	mitochondrion	47.09	85.09
PGSC0003DMT400096774	Potato	mitochondrion, plastid	83.01	85.07
GSMUA_Achr10P...	Banana	mitochondrion	74.27	85.0
TraesCS2B01G281300.1	Wheat	mitochondrion	84.47	84.47
GSMUA_Achr3P17910_001	Banana	mitochondrion	73.79	84.44
GSMUA_Achr6P15590_001	Banana	mitochondrion	73.79	84.44
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.98	83.98
TraesCS2D01G263000.1	Wheat	mitochondrion	83.98	83.98
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	83.5	83.5
TraesCS5B01G397800.1	Wheat	cytosol	83.5	83.5
TraesCS5D01G402800.1	Wheat	cytosol	83.5	83.5
GSMUA_Achr6P23390_001	Banana	cytosol	56.31	82.86
Solyc09g091740.2.1	Tomato	nucleus	86.41	82.41
GSMUA_Achr6P08790_001	Banana	cytosol	55.83	82.14
GSMUA_Achr3P13700_001	Banana	mitochondrion	41.26	78.7
Os11t0425800-01	Rice	mitochondrion	26.21	77.14
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	17.48	75.0
Zm00001d034059_P006	Maize	cytosol	86.41	74.79
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.65	72.73
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	33.98	64.22
Os03t0755700-00	Rice	nucleus	38.84	60.61

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:A0A078HQ78	UniProt:A0A078HQ78	EnsemblPlants:CDY39786	ProteinID:CDY39786
ProteinID:CDY39786.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00068589001
InterPro:IPR036899	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545
PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161
TIGRFAMs:TIGR01077	UniParc:UPI00025420B8	:	:	:	:

Description

BnaA09g10380DBnaA09g10380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ78]

Coordinates

chrLK032457:-:142541..143992

Molecular Weight (calculated)

23505.6 Da

IEP (calculated)

11.070

GRAVY (calculated)

-0.323

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICAK RVVVDARHHM LGRLASIIAK ELLNGQKVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKEKSQ AVYERKKQLI KLRTKAEKVA EEKLGSQLDV
201: LAPIKY

Best Arabidopsis Sequence Match ( AT3G24830.1 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY

Arabidopsis Description

RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.