Factsheet for TraesCS5A01G541100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13700_001	Banana	mitochondrion	60.55	61.11
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	71.56	37.86
PGSC0003DMT400019917	Potato	mitochondrion	66.97	35.44
VIT_07s0005g06490.t01	Wine grape	cytosol	66.97	35.44
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	66.97	35.44
PGSC0003DMT400040760	Potato	mitochondrion, plastid	66.97	35.44
PGSC0003DMT400076290	Potato	cytosol, plastid	66.97	35.44
Solyc05g053670.2.1	Tomato	nucleus	66.97	35.44
Solyc12g098330.1.1	Tomato	nucleus, unclear	66.97	35.44
TraesCS2A01G260700.1	Wheat	golgi, unclear	66.06	34.95
PGSC0003DMT400096774	Potato	mitochondrion, plastid	64.22	34.83
VIT_15s0021g00760.t01	Wine grape	mitochondrion	36.7	34.78
CDY00046	Canola	cytosol	64.22	33.98
Bra013239.1-P	Field mustard	cytosol	64.22	33.98
Bra015088.1-P	Field mustard	cytosol	64.22	33.98
Bra020681.1-P	Field mustard	cytosol	64.22	33.98
Bra036161.1-P	Field mustard	cytosol	64.22	33.98
Bra036669.1-P	Field mustard	cytosol	64.22	33.98
CDX77383	Canola	cytosol	64.22	33.98
CDX85362	Canola	cytosol	64.22	33.98
CDY52083	Canola	cytosol	64.22	33.98
CDY39786	Canola	cytosol	64.22	33.98
CDY33947	Canola	cytosol	64.22	33.98
CDX86281	Canola	cytosol	64.22	33.98
CDY15113	Canola	cytosol	64.22	33.98
CDY05663	Canola	cytosol	64.22	33.98
CDY03292	Canola	cytosol	64.22	33.98
CDX93039	Canola	cytosol	64.22	33.98
Solyc09g091740.2.1	Tomato	nucleus	66.97	33.8
AT3G24830.1	Thale cress	cytosol	63.3	33.5
AT4G13170.1	Thale cress	cytosol	63.3	33.5
AT5G48760.1	Thale cress	cytosol	62.39	33.01
AT3G07110.2	Thale cress	cytosol	61.47	32.37
GSMUA_Achr6P15590_001	Banana	mitochondrion	48.62	29.44
GSMUA_Achr10P...	Banana	mitochondrion	48.62	29.44
GSMUA_Achr3P17910_001	Banana	mitochondrion	47.71	28.89
GSMUA_Achr6P23390_001	Banana	cytosol	30.28	23.57
GSMUA_Achr6P08790_001	Banana	cytosol	30.28	23.57
CDY19938	Canola	mitochondrion	19.27	18.42
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	0.92	3.03
KRH25477	Soybean	nucleus	0.0	0.0
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.90.1180.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR036899
PIRSF:PIRSF002181	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	EnsemblPlantsGene:TraesCS5A01G541100	EnsemblPlants:TraesCS5A01G541100.1	TIGR:cd00392	:	:

Description

No Description!

Coordinates

chr5A:-:698101076..698101704

Molecular Weight (calculated)

12368.4 Da

IEP (calculated)

11.459

GRAVY (calculated)

-0.138

Length

109 amino acids

Sequence
(BLAST)

001: MLGRLASIVA KELLNRQRVV VVRCEEICMS GDLVRQKMKY LHFLRKRMNT KPSHSPIHFR APAKILWRTI RGYVTIAALD SQGPVAAARD SLDDGPSLAR
101: FRRVSLPVD

Best Arabidopsis Sequence Match ( AT3G24830.1 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY

Arabidopsis Description

RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.