Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036161.1-P | Field mustard | cytosol | 95.63 | 95.63 |
| CDX86281 | Canola | cytosol | 95.63 | 95.63 |
| CDY00046 | Canola | cytosol | 95.63 | 95.63 |
| CDX85362 | Canola | cytosol | 95.15 | 95.15 |
| CDY05663 | Canola | cytosol | 95.15 | 95.15 |
| CDY33947 | Canola | cytosol | 95.15 | 95.15 |
| Bra020681.1-P | Field mustard | cytosol | 94.66 | 94.66 |
| AT4G13170.1 | Thale cress | cytosol | 92.23 | 92.23 |
| AT3G07110.2 | Thale cress | cytosol | 91.75 | 91.3 |
| AT3G24830.1 | Thale cress | cytosol | 91.26 | 91.26 |
| KRH36792 | Soybean | nucleus | 90.29 | 90.29 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 90.29 | 90.29 |
| KRH07489 | Soybean | nucleus | 90.29 | 90.29 |
| CDY19938 | Canola | mitochondrion | 49.51 | 89.47 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.83 | 88.83 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 88.35 | 88.35 |
| KRH46742 | Soybean | nucleus | 88.35 | 88.35 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 87.86 | 87.86 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 87.86 | 87.86 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 49.03 | 87.83 |
| Solyc05g053670.2.1 | Tomato | nucleus | 87.38 | 87.38 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 87.38 | 87.38 |
| KRH11781 | Soybean | nucleus | 87.38 | 87.38 |
| GSMUA_Achr10P... | Banana | mitochondrion | 75.73 | 86.67 |
| KRH46743 | Soybean | cytosol | 86.41 | 86.41 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 75.24 | 86.11 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 58.25 | 85.71 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 83.5 | 85.57 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 74.76 | 85.56 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 57.77 | 85.0 |
| EER93429 | Sorghum | cytosol | 84.95 | 84.95 |
| EES17613 | Sorghum | mitochondrion | 84.47 | 84.47 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 83.98 | 83.98 |
| Zm00001d013252_P001 | Maize | plasma membrane | 83.98 | 83.98 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 83.5 | 83.5 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 83.5 | 83.5 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 83.01 | 83.01 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 83.01 | 83.01 |
| Solyc09g091740.2.1 | Tomato | nucleus | 86.41 | 82.41 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 82.04 | 82.04 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 81.55 | 81.55 |
| Os11t0425800-01 | Rice | mitochondrion | 26.21 | 77.14 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 17.96 | 77.08 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 40.29 | 76.85 |
| Zm00001d034059_P006 | Maize | cytosol | 85.44 | 73.95 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.65 | 72.73 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 33.01 | 62.39 |
| Os03t0755700-00 | Rice | nucleus | 39.32 | 61.36 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | EntrezGene:834934 | UniProt:A0A178U7C4 | ProteinID:AED95720.1 | ProteinID:AED95721.1 |
| ArrayExpress:AT5G48760 | EnsemblPlantsGene:AT5G48760 | RefSeq:AT5G48760 | TAIR:AT5G48760 | RefSeq:AT5G48760-TAIR-G | EnsemblPlants:AT5G48760.1 |
| TAIR:AT5G48760.1 | EMBL:AY088191 | EMBL:AY090359 | EMBL:AY122902 | Unigene:At.25519 | ProteinID:BAB09429.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | InterPro:IPR036899 |
| HAMAP:MF_01366 | RefSeq:NP_001078737.1 | RefSeq:NP_199687.1 | ProteinID:OAO89703.1 | PFAM:PF00572 | PIRSF:PIRSF002181 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | UniProt:Q9FKC0 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS |
| InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI000000115B | EMBL:Z26407 |
Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
Coordinates
chr5:-:19771099..19772789
Molecular Weight (calculated)
23591.6 Da
IEP (calculated)
11.052
GRAVY (calculated)
-0.377
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.