Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93429 | Sorghum | cytosol | 84.87 | 98.06 |
| Zm00001d013252_P001 | Maize | plasma membrane | 83.19 | 96.12 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 80.67 | 93.2 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 80.67 | 93.2 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 80.25 | 92.72 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 76.47 | 88.35 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 76.47 | 88.35 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 76.05 | 87.86 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 76.05 | 87.86 |
| Solyc05g053670.2.1 | Tomato | nucleus | 76.05 | 87.86 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 65.97 | 87.22 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 51.26 | 87.14 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 42.02 | 86.96 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 75.21 | 86.89 |
| GSMUA_Achr10P... | Banana | mitochondrion | 65.55 | 86.67 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 65.55 | 86.67 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 74.79 | 86.41 |
| CDY39786 | Canola | cytosol | 74.79 | 86.41 |
| Bra036669.1-P | Field mustard | cytosol | 74.79 | 86.41 |
| CDY03292 | Canola | cytosol | 74.79 | 86.41 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 50.42 | 85.71 |
| AT5G48760.1 | Thale cress | cytosol | 73.95 | 85.44 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 71.85 | 85.07 |
| CDX93039 | Canola | cytosol | 73.11 | 84.47 |
| Bra013239.1-P | Field mustard | cytosol | 73.11 | 84.47 |
| Bra036161.1-P | Field mustard | cytosol | 73.11 | 84.47 |
| CDX77383 | Canola | cytosol | 73.11 | 84.47 |
| CDX85362 | Canola | cytosol | 73.11 | 84.47 |
| CDX86281 | Canola | cytosol | 73.11 | 84.47 |
| CDY00046 | Canola | cytosol | 73.11 | 84.47 |
| CDY52083 | Canola | cytosol | 73.11 | 84.47 |
| CDY33947 | Canola | cytosol | 73.11 | 84.47 |
| CDY15113 | Canola | cytosol | 73.11 | 84.47 |
| CDY05663 | Canola | cytosol | 73.11 | 84.47 |
| AT3G24830.1 | Thale cress | cytosol | 72.69 | 83.98 |
| Bra020681.1-P | Field mustard | cytosol | 72.69 | 83.98 |
| Bra015088.1-P | Field mustard | cytosol | 72.69 | 83.98 |
| AT4G13170.1 | Thale cress | cytosol | 71.85 | 83.01 |
| Solyc09g091740.2.1 | Tomato | nucleus | 75.21 | 82.87 |
| Os11t0425800-01 | Rice | mitochondrion | 24.37 | 82.86 |
| AT3G07110.2 | Thale cress | cytosol | 71.01 | 81.64 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 36.13 | 79.63 |
| CDY19938 | Canola | mitochondrion | 36.55 | 76.32 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 9.66 | 69.7 |
| Os03t0755700-00 | Rice | nucleus | 37.4 | 67.42 |
| KRH25477 | Soybean | nucleus | 16.39 | 63.93 |
Protein Annotations
| MapMan:17.1.2.1.14 | UniProt:A0A1D6L548 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR036899 |
| HAMAP:MF_01366 | ProteinID:ONM09471.1 | ProteinID:ONM09474.1 | PFAM:PF00572 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 |
| InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI0008435760 |
| EnsemblPlantsGene:Zm00001d034059 | EnsemblPlants:Zm00001d034059_P006 | EnsemblPlants:Zm00001d034059_T006 | SEG:seg | : | : |
Description
ribosomal protein L13A homolog60S ribosomal protein L13a-1
Coordinates
chr1:+:282747834..282749777
Molecular Weight (calculated)
27136.1 Da
IEP (calculated)
10.780
GRAVY (calculated)
-0.189
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGVCAK RIVVDARHHM LGRLSSIIAK ELLNGQKVVV VRCEEICMSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PAKILWRTIR GMIPHKTKRG
101: EAALARLKTY EGVPPPYDKT KRMVIPDALK YVFPSVFGIY LIAGRSCFVT FVSDAILVVV LRVLRLQPGH KYCLLGELSK EVGWNYHDTI RELEEKRKEK
201: AKVAYERKKQ LAKLRVKAEK AAEEKLGSQL EILAPIKY
101: EAALARLKTY EGVPPPYDKT KRMVIPDALK YVFPSVFGIY LIAGRSCFVT FVSDAILVVV LRVLRLQPGH KYCLLGELSK EVGWNYHDTI RELEEKRKEK
201: AKVAYERKKQ LAKLRVKAEK AAEEKLGSQL EILAPIKY
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.