Factsheet for GSMUA_Achr6P15590_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	97.78	97.78
GSMUA_Achr6P08790_001	Banana	cytosol	74.44	95.71
GSMUA_Achr6P23390_001	Banana	cytosol	74.44	95.71
GSMUA_Achr3P17910_001	Banana	mitochondrion	95.56	95.56
Os11t0425800-01	Rice	mitochondrion	32.22	82.86
VIT_15s0021g00760.t01	Wine grape	mitochondrion	51.11	80.0
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	14.44	78.79
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	88.33	77.18
TraesCS5D01G402800.1	Wheat	cytosol	88.33	77.18
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	20.56	77.08
TraesCS5B01G397800.1	Wheat	cytosol	87.78	76.7
CDY19938	Canola	mitochondrion	48.33	76.32
PGSC0003DMT400019917	Potato	mitochondrion	87.22	76.21
Solyc12g098330.1.1	Tomato	nucleus, unclear	87.22	76.21
VIT_07s0005g06490.t01	Wine grape	cytosol	87.22	76.21
PGSC0003DMT400040760	Potato	mitochondrion, plastid	86.67	75.73
Solyc05g053670.2.1	Tomato	nucleus	86.67	75.73
EES17613	Sorghum	mitochondrion	86.67	75.73
EER93429	Sorghum	cytosol	86.67	75.73
Zm00001d013252_P001	Maize	plasma membrane	86.67	75.73
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.11	75.24
TraesCS2B01G281300.1	Wheat	mitochondrion	86.11	75.24
AT5G48760.1	Thale cress	cytosol	86.11	75.24
HORVU2Hr1G063880.5	Barley	mitochondrion	86.11	75.24
CDY33947	Canola	cytosol	85.56	74.76
CDX93039	Canola	cytosol	85.56	74.76
TraesCS2A01G260700.1	Wheat	golgi, unclear	85.56	74.76
CDY15113	Canola	cytosol	85.56	74.76
CDX85362	Canola	cytosol	85.56	74.76
Bra013239.1-P	Field mustard	cytosol	85.56	74.76
CDY05663	Canola	cytosol	85.56	74.76
Bra036161.1-P	Field mustard	cytosol	85.0	74.27
CDY52083	Canola	cytosol	85.0	74.27
PGSC0003DMT400076290	Potato	cytosol, plastid	85.0	74.27
Bra020681.1-P	Field mustard	cytosol	85.0	74.27
CDX77383	Canola	cytosol	85.0	74.27
CDX86281	Canola	cytosol	85.0	74.27
CDY00046	Canola	cytosol	85.0	74.27
Bra036669.1-P	Field mustard	cytosol	84.44	73.79
Bra015088.1-P	Field mustard	cytosol	84.44	73.79
CDY39786	Canola	cytosol	84.44	73.79
CDY03292	Canola	cytosol	84.44	73.79
PGSC0003DMT400096774	Potato	mitochondrion, plastid	82.22	73.63
AT3G24830.1	Thale cress	cytosol	83.89	73.3
TraesCS2D01G263000.1	Wheat	mitochondrion	83.89	73.3
AT4G13170.1	Thale cress	cytosol	83.33	72.82
AT3G07110.2	Thale cress	cytosol	82.78	71.98
Solyc09g091740.2.1	Tomato	nucleus	83.89	69.91
Zm00001d034059_P006	Maize	cytosol	86.67	65.55
Os03t0755700-00	Rice	nucleus	47.78	65.15
GSMUA_Achr3P13700_001	Banana	mitochondrion	37.78	62.96
KRH25477	Soybean	nucleus	18.89	55.74
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	29.44	48.62

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G15590_001
EnsemblPlants:GSMUA_Achr6P15590_001	EnsemblPlants:GSMUA_Achr6T15590_001	InterPro:IPR036899	UniProt:M0T7A7	ScanProsite:PS00783	PANTHER:PTHR11545
PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161
TIGRFAMs:TIGR01077	UniParc:UPI000294DB26	SEG:seg	:	:	:

Description

60S ribosomal protein L13a-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G15590_001]

Coordinates

chr6:+:10413098..10416110

Molecular Weight (calculated)

20449.6 Da

IEP (calculated)

11.283

GRAVY (calculated)

-0.423

Length

180 amino acids

Sequence
(BLAST)

001: MVSGSGLCAR RVVVDARHHM LGRLASIVAK ELLNGQRVVR MNTKPSHGPI HFRAPAKILW RTIRGMIPHK TKRGAAALAR LKAYEGVPPP YDKTKRMVIP
101: DALKVLRLQP GHRYCLLGRL SSEVGWNYYD TVKVLEAKRK ERAKVAYERR KQLTKLRLKA EKTAEEKLGP QLDILAPLKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.