Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24830.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT3G24830.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT3G24830.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0425800-01 | Rice | mitochondrion | 42.42 | 80.0 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 17.42 | 69.7 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 60.61 | 69.57 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 65.15 | 61.43 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 65.15 | 61.43 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 65.15 | 47.78 |
| GSMUA_Achr10P... | Banana | mitochondrion | 65.15 | 47.78 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 65.15 | 47.78 |
| CDY19938 | Canola | mitochondrion | 40.91 | 47.37 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 68.18 | 43.69 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 68.18 | 43.69 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 68.18 | 43.69 |
| Zm00001d013252_P001 | Maize | plasma membrane | 65.15 | 41.75 |
| EES17613 | Sorghum | mitochondrion | 65.15 | 41.75 |
| EER93429 | Sorghum | cytosol | 65.15 | 41.75 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 63.64 | 40.78 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 62.88 | 40.29 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 62.88 | 40.29 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 62.88 | 40.29 |
| Solyc05g053670.2.1 | Tomato | nucleus | 62.88 | 40.29 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 62.88 | 40.29 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 62.88 | 40.29 |
| AT5G48760.1 | Thale cress | cytosol | 61.36 | 39.32 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 59.85 | 39.3 |
| AT3G24830.1 | Thale cress | cytosol | 60.61 | 38.84 |
| CDY00046 | Canola | cytosol | 60.61 | 38.84 |
| Bra020681.1-P | Field mustard | cytosol | 60.61 | 38.84 |
| Bra036161.1-P | Field mustard | cytosol | 60.61 | 38.84 |
| Bra036669.1-P | Field mustard | cytosol | 60.61 | 38.84 |
| CDX85362 | Canola | cytosol | 60.61 | 38.84 |
| CDX86281 | Canola | cytosol | 60.61 | 38.84 |
| CDX93039 | Canola | cytosol | 60.61 | 38.84 |
| CDY03292 | Canola | cytosol | 60.61 | 38.84 |
| CDY05663 | Canola | cytosol | 60.61 | 38.84 |
| Bra013239.1-P | Field mustard | cytosol | 60.61 | 38.84 |
| CDY15113 | Canola | cytosol | 60.61 | 38.84 |
| CDY33947 | Canola | cytosol | 60.61 | 38.84 |
| CDY39786 | Canola | cytosol | 60.61 | 38.84 |
| Solyc09g091740.2.1 | Tomato | nucleus | 62.88 | 38.43 |
| CDY52083 | Canola | cytosol | 59.85 | 38.35 |
| Bra015088.1-P | Field mustard | cytosol | 59.85 | 38.35 |
| AT4G13170.1 | Thale cress | cytosol | 59.85 | 38.35 |
| CDX77383 | Canola | cytosol | 59.85 | 38.35 |
| Zm00001d034059_P006 | Maize | cytosol | 67.42 | 37.4 |
| AT3G07110.2 | Thale cress | cytosol | 58.33 | 37.2 |
| KRH25477 | Soybean | nucleus | 14.39 | 31.15 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 24.24 | 29.63 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | UniProt:A0A0P0W363 | ProteinID:BAS86450.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 |
| GO:GO:0022625 | InterPro:IPR036899 | EnsemblPlantsGene:Os03g0755700 | EnsemblPlants:Os03t0755700-00 | PIRSF:PIRSF002181 | PANTHER:PTHR11545 |
| PANTHER:PTHR11545:SF3 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | UniParc:UPI0001C7EF03 |
Description
Similar to Ribosomal protein L13a. (Os03t0755700-00)
Coordinates
chr3:-:31186884..31190795
Molecular Weight (calculated)
14894.7 Da
IEP (calculated)
10.210
GRAVY (calculated)
-0.149
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTKPSHGPI HFRSPAKILW RTVRGMIPHK TKRGEAALAR LKAYEVVTPP YDRTKRMVIP DALKVLRLQP GHKYCLLGQL SKEVGWNYYD TIRICVLCIG
101: GGCCDEDIML PLLKALRTLA GRIEPIIKAT TE
101: GGCCDEDIML PLLKALRTLA GRIEPIIKAT TE
001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
Arabidopsis Description
RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.