Factsheet for PGSC0003DMT400040760

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019917	Potato	mitochondrion	99.51	99.51
Solyc05g053670.2.1	Tomato	nucleus	99.51	99.51
PGSC0003DMT400076290	Potato	cytosol, plastid	97.09	97.09
PGSC0003DMT400096774	Potato	mitochondrion, plastid	93.69	96.02
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	90.78	90.78
VIT_15s0021g00760.t01	Wine grape	mitochondrion	50.49	90.43
VIT_07s0005g06490.t01	Wine grape	cytosol	88.83	88.83
CDY52083	Canola	cytosol	88.35	88.35
CDX77383	Canola	cytosol	88.35	88.35
EES17613	Sorghum	mitochondrion	88.35	88.35
EER93429	Sorghum	cytosol	87.86	87.86
Bra015088.1-P	Field mustard	cytosol	87.86	87.86
CDY39786	Canola	cytosol	87.86	87.86
CDY03292	Canola	cytosol	87.86	87.86
Bra036669.1-P	Field mustard	cytosol	87.86	87.86
AT5G48760.1	Thale cress	cytosol	87.86	87.86
GSMUA_Achr10P...	Banana	mitochondrion	76.7	87.78
CDX93039	Canola	cytosol	87.38	87.38
CDY15113	Canola	cytosol	87.38	87.38
Bra013239.1-P	Field mustard	cytosol	87.38	87.38
GSMUA_Achr6P23390_001	Banana	cytosol	59.22	87.14
Zm00001d013252_P001	Maize	plasma membrane	86.89	86.89
AT3G24830.1	Thale cress	cytosol	86.89	86.89
GSMUA_Achr6P15590_001	Banana	mitochondrion	75.73	86.67
CDY33947	Canola	cytosol	86.41	86.41
CDY05663	Canola	cytosol	86.41	86.41
CDY00046	Canola	cytosol	86.41	86.41
CDX86281	Canola	cytosol	86.41	86.41
CDX85362	Canola	cytosol	86.41	86.41
Bra036161.1-P	Field mustard	cytosol	86.41	86.41
AT4G13170.1	Thale cress	cytosol	86.41	86.41
AT3G07110.2	Thale cress	cytosol	86.41	85.99
Bra020681.1-P	Field mustard	cytosol	85.92	85.92
GSMUA_Achr6P08790_001	Banana	cytosol	58.25	85.71
GSMUA_Achr3P17910_001	Banana	mitochondrion	74.76	85.56
TraesCS5D01G402800.1	Wheat	cytosol	85.44	85.44
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.44	85.44
HORVU2Hr1G063880.5	Barley	mitochondrion	85.44	85.44
KRH46742	Soybean	nucleus	84.95	84.95
TraesCS5B01G397800.1	Wheat	cytosol	84.95	84.95
KRH36792	Soybean	nucleus	84.95	84.95
TraesCS2B01G281300.1	Wheat	mitochondrion	84.47	84.47
KRH07489	Soybean	nucleus	84.47	84.47
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.5	83.5
KRH46743	Soybean	cytosol	83.01	83.01
TraesCS2D01G263000.1	Wheat	mitochondrion	82.04	82.04
KRH11781	Soybean	nucleus	82.04	82.04
GSMUA_Achr3P13700_001	Banana	mitochondrion	42.72	81.48
CDY19938	Canola	mitochondrion	43.69	78.95
Os11t0425800-01	Rice	mitochondrion	26.21	77.14
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	17.96	77.08
Zm00001d034059_P006	Maize	cytosol	87.86	76.05
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.16	69.7
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
Os03t0755700-00	Rice	nucleus	40.29	62.88

Protein Annotations

EntrezGene:102584826	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	ProteinID:ABA46790	ProteinID:ABA46790.1	EMBL:DQ200397
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036899	HAMAP:MF_01366
RefSeq:NP_001275476.1	PFAM:PF00572	EnsemblPlantsGene:PGSC0003DMG402015759	PGSC:PGSC0003DMG402015759	EnsemblPlants:PGSC0003DMT400040760	PIRSF:PIRSF002181
ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	UniProt:Q3HRW1	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS
InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI00005C5039	:

Description

60S ribosomal protein L13a [Source:PGSC_GENE;Acc:PGSC0003DMG402015759]

Coordinates

chr5:+:49105830..49108261

Molecular Weight (calculated)

23546.5 Da

IEP (calculated)

11.202

GRAVY (calculated)

-0.392

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGISAR RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKVY EGVPPPYDKI KRMVIPDALK VLRLQAGHKY CLLGKLSSEV GWNHYDTIKE LENKRKERAQ VAYERRKQLA KLRVKAEKAA EEKLGPQLAV
201: IEPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.