CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	KRH22291	AT2G42580.1	19000166
AT3G24830.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46742	Soybean	nucleus	98.06	98.06
KRH07489	Soybean	nucleus	93.2	93.2
KRH36792	Soybean	nucleus	92.23	92.23
KRH11781	Soybean	nucleus	90.78	90.78
VIT_07s0005g06490.t01	Wine grape	cytosol	87.86	87.86
Bra020681.1-P	Field mustard	cytosol	87.38	87.38
CDX86281	Canola	cytosol	86.89	86.89
CDY33947	Canola	cytosol	86.89	86.89
CDY05663	Canola	cytosol	86.89	86.89
CDY00046	Canola	cytosol	86.89	86.89
CDX85362	Canola	cytosol	86.89	86.89
Bra036161.1-P	Field mustard	cytosol	86.89	86.89
CDY03292	Canola	cytosol	86.41	86.41
Bra036669.1-P	Field mustard	cytosol	86.41	86.41
AT5G48760.1	Thale cress	cytosol	86.41	86.41
CDY39786	Canola	cytosol	86.41	86.41
AT4G13170.1	Thale cress	cytosol	85.92	85.92
AT3G07110.2	Thale cress	cytosol	85.92	85.51
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	85.44	85.44
CDX77383	Canola	cytosol	85.44	85.44
Bra015088.1-P	Field mustard	cytosol	85.44	85.44
CDY52083	Canola	cytosol	85.44	85.44
VIT_15s0021g00760.t01	Wine grape	mitochondrion	47.57	85.22
CDY15113	Canola	cytosol	84.95	84.95
CDX93039	Canola	cytosol	84.95	84.95
Bra013239.1-P	Field mustard	cytosol	84.95	84.95
AT3G24830.1	Thale cress	cytosol	84.95	84.95
PGSC0003DMT400019917	Potato	mitochondrion	83.5	83.5
PGSC0003DMT400076290	Potato	cytosol, plastid	83.5	83.5
Solyc12g098330.1.1	Tomato	nucleus, unclear	83.5	83.5
PGSC0003DMT400040760	Potato	mitochondrion, plastid	83.01	83.01
Solyc05g053670.2.1	Tomato	nucleus	83.01	83.01
PGSC0003DMT400096774	Potato	mitochondrion, plastid	78.64	80.6
CDY19938	Canola	mitochondrion	43.69	78.95
Solyc09g091740.2.1	Tomato	nucleus	82.52	78.7
KRH25477	Soybean	nucleus	20.39	68.85

Protein Annotations

EntrezGene:100527190	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	EMBL:ACUP02005356	EMBL:BT092014	UniProt:C6T3K3
EnsemblPlantsGene:GLYMA_08G354000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR036899
EnsemblPlants:KRH46743	ProteinID:KRH46743	ProteinID:KRH46743.1	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181
ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc
InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI0001B15514	:	:

Description

hypothetical protein

Coordinates

chr8:-:46681016..46682769

Molecular Weight (calculated)

23712.7 Da

IEP (calculated)

10.931

GRAVY (calculated)

-0.482

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICAK RVIVDARHHM LGRLASIVAK ELLNGQKVVV VRCEEICISG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PGKIFWRTVR GMIPHKTKRG
101: EAALARLKVY EGIPPPYDKT KRMVVPDALK VLRLQKGHKY CHLGQLSSEV GWNYYDTIRE LEKKRKDRAQ LCYERKKQLA KLREKAEKVA EKKLGSQIEI
201: LAPVKY

Best Arabidopsis Sequence Match ( AT3G07110.1 )
(BLAST)

001: MVSGSGICAK RVVVDARHHM LGRLASVVAK DLLNGQNIVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: ANALARLKVF EGVPTPYDKI KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LENKRKERAQ AVYERKKQLS KLRAKAEKVA EEKLGSQLDV
201: LAPVKY

Arabidopsis Description

Ribosomal protein L13 family protein [Source:UniProtKB/TrEMBL;Acc:F4JD96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.