Factsheet for Bra020681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33947	Canola	cytosol	99.51	99.51
Bra036161.1-P	Field mustard	cytosol	99.03	99.03
AT5G48760.1	Thale cress	cytosol	94.66	94.66
Bra036669.1-P	Field mustard	cytosol	93.2	93.2
Bra013239.1-P	Field mustard	cytosol	92.72	92.72
Bra015088.1-P	Field mustard	cytosol	92.72	92.72
KRH46742	Soybean	nucleus	88.83	88.83
VIT_07s0005g06490.t01	Wine grape	cytosol	88.35	88.35
KRH36792	Soybean	nucleus	88.35	88.35
KRH07489	Soybean	nucleus	88.35	88.35
KRH46743	Soybean	cytosol	87.38	87.38
VIT_15s0021g00760.t01	Wine grape	mitochondrion	48.54	86.96
PGSC0003DMT400019917	Potato	mitochondrion	86.41	86.41
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.41	86.41
Solyc12g098330.1.1	Tomato	nucleus, unclear	85.92	85.92
PGSC0003DMT400040760	Potato	mitochondrion, plastid	85.92	85.92
KRH11781	Soybean	nucleus	85.44	85.44
PGSC0003DMT400076290	Potato	cytosol, plastid	85.44	85.44
Solyc05g053670.2.1	Tomato	nucleus	85.44	85.44
GSMUA_Achr10P...	Banana	mitochondrion	74.27	85.0
GSMUA_Achr6P15590_001	Banana	mitochondrion	74.27	85.0
PGSC0003DMT400096774	Potato	mitochondrion, plastid	82.04	84.08
EER93429	Sorghum	cytosol	83.5	83.5
GSMUA_Achr3P17910_001	Banana	mitochondrion	72.82	83.33
HORVU2Hr1G063880.5	Barley	mitochondrion	83.01	83.01
EES17613	Sorghum	mitochondrion	83.01	83.01
GSMUA_Achr6P23390_001	Banana	cytosol	56.31	82.86
TraesCS5D01G402800.1	Wheat	cytosol	82.52	82.52
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	82.52	82.52
GSMUA_Achr6P08790_001	Banana	cytosol	55.83	82.14
TraesCS2B01G281300.1	Wheat	mitochondrion	82.04	82.04
TraesCS5B01G397800.1	Wheat	cytosol	82.04	82.04
Zm00001d013252_P001	Maize	plasma membrane	82.04	82.04
TraesCS2A01G260700.1	Wheat	golgi, unclear	81.55	81.55
TraesCS2D01G263000.1	Wheat	mitochondrion	81.07	81.07
Solyc09g091740.2.1	Tomato	nucleus	84.47	80.56
GSMUA_Achr3P13700_001	Banana	mitochondrion	40.29	76.85
Os11t0425800-01	Rice	mitochondrion	25.73	75.71
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.65	72.73
Zm00001d034059_P006	Maize	cytosol	83.98	72.69
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	16.02	68.75
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	33.98	64.22
Os03t0755700-00	Rice	nucleus	38.84	60.61

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	EnsemblPlantsGene:Bra020681	EnsemblPlants:Bra020681.1	EnsemblPlants:Bra020681.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036899	UniProt:M4DVY7
HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
UniParc:UPI000254632D	:	:	:	:	:

Description

AT5G48760 (E=3e-111) | 60S ribosomal protein L13A (RPL13aD)

Coordinates

chrA02:-:23773174..23775208

Molecular Weight (calculated)

23536.6 Da

IEP (calculated)

11.109

GRAVY (calculated)

-0.359

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASIVAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARMKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEAKRKERSQ VVYERKKQLN KLRAKAEKVA EEKLGAQIEI
201: LAPVKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.