Factsheet for TraesCS2A01G260700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G24830.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G281300.1	Wheat	mitochondrion	99.03	99.03
TraesCS2D01G263000.1	Wheat	mitochondrion	98.06	98.06
HORVU2Hr1G063880.5	Barley	mitochondrion	98.06	98.06
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	91.26	91.26
GSMUA_Achr6P15590_001	Banana	mitochondrion	74.76	85.56
GSMUA_Achr10P...	Banana	mitochondrion	74.76	85.56
GSMUA_Achr3P17910_001	Banana	mitochondrion	73.79	84.44
CDY39786	Canola	cytosol	83.98	83.98
Solyc12g098330.1.1	Tomato	nucleus, unclear	83.98	83.98
PGSC0003DMT400019917	Potato	mitochondrion	83.98	83.98
CDY03292	Canola	cytosol	83.98	83.98
Bra036669.1-P	Field mustard	cytosol	83.98	83.98
Solyc05g053670.2.1	Tomato	nucleus	83.5	83.5
PGSC0003DMT400040760	Potato	mitochondrion, plastid	83.5	83.5
CDX93039	Canola	cytosol	83.01	83.01
Bra013239.1-P	Field mustard	cytosol	83.01	83.01
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	83.01	83.01
CDX77383	Canola	cytosol	83.01	83.01
CDY52083	Canola	cytosol	83.01	83.01
CDY15113	Canola	cytosol	83.01	83.01
GSMUA_Achr6P23390_001	Banana	cytosol	56.31	82.86
Bra015088.1-P	Field mustard	cytosol	82.52	82.52
CDY33947	Canola	cytosol	82.04	82.04
AT3G24830.1	Thale cress	cytosol	82.04	82.04
AT5G48760.1	Thale cress	cytosol	82.04	82.04
CDX86281	Canola	cytosol	82.04	82.04
PGSC0003DMT400076290	Potato	cytosol, plastid	82.04	82.04
CDY00046	Canola	cytosol	82.04	82.04
CDX85362	Canola	cytosol	82.04	82.04
Bra036161.1-P	Field mustard	cytosol	82.04	82.04
CDY05663	Canola	cytosol	82.04	82.04
Bra020681.1-P	Field mustard	cytosol	81.55	81.55
AT4G13170.1	Thale cress	cytosol	81.55	81.55
GSMUA_Achr6P08790_001	Banana	cytosol	55.34	81.43
VIT_07s0005g06490.t01	Wine grape	cytosol	81.07	81.07
AT3G07110.2	Thale cress	cytosol	81.07	80.68
PGSC0003DMT400096774	Potato	mitochondrion, plastid	78.64	80.6
VIT_15s0021g00760.t01	Wine grape	mitochondrion	44.66	80.0
GSMUA_Achr3P13700_001	Banana	mitochondrion	41.26	78.7
Solyc09g091740.2.1	Tomato	nucleus	81.07	77.31
CDY19938	Canola	mitochondrion	40.29	72.81
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.16	69.7
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	34.95	66.06
KRH25477	Soybean	nucleus	15.53	52.46

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR036899
HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
EnsemblPlantsGene:TraesCS2A01G260700	EnsemblPlants:TraesCS2A01G260700.1	TIGR:cd00392	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:-:410860432..410862969

Molecular Weight (calculated)

23674.5 Da

IEP (calculated)

11.216

GRAVY (calculated)

-0.462

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGVSAR RVVVDARHHM LGRLASIVAK ELLNGQRVVV VRCEEMCISG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSRIFWRTVR GMIPHKTPRG
101: EAALARLKAF EGVPPPYDRT KRMVIPDALK VLRLQPGHRF CLLGELSKEV GWNYHETIKE LEEKRKEKAK VSYDRRKQLA KLRFKAEKAA EEKLGSQLDI
201: LAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.