Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P23390_001 | Banana | cytosol | 95.71 | 95.71 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 65.0 | 79.13 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 18.57 | 78.79 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 25.71 | 75.0 |
| CDY19938 | Canola | mitochondrion | 60.71 | 74.56 |
| GSMUA_Achr10P... | Banana | mitochondrion | 95.71 | 74.44 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 95.71 | 74.44 |
| Os11t0425800-01 | Rice | mitochondrion | 37.14 | 74.29 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 95.0 | 73.89 |
| Os03t0755700-00 | Rice | nucleus | 61.43 | 65.15 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 86.43 | 58.74 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 86.43 | 58.74 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 86.43 | 58.74 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 85.71 | 58.25 |
| Solyc05g053670.2.1 | Tomato | nucleus | 85.71 | 58.25 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 85.0 | 57.77 |
| AT5G48760.1 | Thale cress | cytosol | 85.0 | 57.77 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 84.29 | 57.28 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 84.29 | 57.28 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 84.29 | 57.28 |
| EER93429 | Sorghum | cytosol | 84.29 | 57.28 |
| EES17613 | Sorghum | mitochondrion | 84.29 | 57.28 |
| Zm00001d013252_P001 | Maize | plasma membrane | 84.29 | 57.28 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 83.57 | 56.8 |
| AT3G24830.1 | Thale cress | cytosol | 82.86 | 56.31 |
| Bra013239.1-P | Field mustard | cytosol | 82.86 | 56.31 |
| CDY33947 | Canola | cytosol | 82.86 | 56.31 |
| AT4G13170.1 | Thale cress | cytosol | 82.86 | 56.31 |
| CDY15113 | Canola | cytosol | 82.86 | 56.31 |
| CDY05663 | Canola | cytosol | 82.86 | 56.31 |
| CDX85362 | Canola | cytosol | 82.86 | 56.31 |
| CDX93039 | Canola | cytosol | 82.86 | 56.31 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 82.14 | 55.83 |
| Bra036669.1-P | Field mustard | cytosol | 82.14 | 55.83 |
| Bra036161.1-P | Field mustard | cytosol | 82.14 | 55.83 |
| Bra020681.1-P | Field mustard | cytosol | 82.14 | 55.83 |
| CDX86281 | Canola | cytosol | 82.14 | 55.83 |
| CDY00046 | Canola | cytosol | 82.14 | 55.83 |
| CDY03292 | Canola | cytosol | 82.14 | 55.83 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 82.14 | 55.83 |
| CDY39786 | Canola | cytosol | 82.14 | 55.83 |
| KRH25477 | Soybean | nucleus | 24.29 | 55.74 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 80.0 | 55.72 |
| AT3G07110.2 | Thale cress | cytosol | 82.14 | 55.56 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 81.43 | 55.34 |
| CDX77383 | Canola | cytosol | 81.43 | 55.34 |
| Bra015088.1-P | Field mustard | cytosol | 81.43 | 55.34 |
| CDY52083 | Canola | cytosol | 81.43 | 55.34 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 79.29 | 53.88 |
| Solyc09g091740.2.1 | Tomato | nucleus | 82.86 | 53.7 |
| Zm00001d034059_P006 | Maize | cytosol | 85.71 | 50.42 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 25.71 | 33.33 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 23.57 | 30.28 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr6G08790_001 | EnsemblPlants:GSMUA_Achr6P08790_001 | EnsemblPlants:GSMUA_Achr6T08790_001 | InterPro:IPR036899 | UniProt:M0T5C8 | PIRSF:PIRSF002181 |
| ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc |
| InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI000294C0BB | SEG:seg | : |
Description
60S ribosomal protein L13a-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08790_001]
Coordinates
chr6:-:5814152..5816211
Molecular Weight (calculated)
15939.9 Da
IEP (calculated)
11.081
GRAVY (calculated)
-0.500
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTKPSHGPI HFRAPAKILW RTIRGMIPHK TKRGAAALAR LKAYEGVPPP YDKIKRMVIP DALKVLRLQP GHRYCLLGRL SSEVGWNYYD TVKVLEAKRK
101: ERAAVAYERR KQLTKLRLKA EKAAGDKLGS QLDILAPLKY
101: ERAAVAYERR KQLTKLRLKA EKAAGDKLGS QLDILAPLKY
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.