Factsheet for GSMUA_Achr6P08770_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0425800-01	Rice	mitochondrion	69.7	32.86
KRH25477	Soybean	nucleus	39.39	21.31
VIT_15s0021g00760.t01	Wine grape	mitochondrion	72.73	20.87
GSMUA_Achr6P23390_001	Banana	cytosol	78.79	18.57
GSMUA_Achr6P08790_001	Banana	cytosol	78.79	18.57
Os03t0755700-00	Rice	nucleus	69.7	17.42
GSMUA_Achr3P17910_001	Banana	mitochondrion	81.82	15.0
CDY19938	Canola	mitochondrion	51.52	14.91
GSMUA_Achr6P15590_001	Banana	mitochondrion	78.79	14.44
GSMUA_Achr10P...	Banana	mitochondrion	78.79	14.44
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	75.76	12.14
VIT_07s0005g06490.t01	Wine grape	cytosol	75.76	12.14
PGSC0003DMT400096774	Potato	mitochondrion, plastid	72.73	11.94
TraesCS5D01G402800.1	Wheat	cytosol	72.73	11.65
TraesCS5B01G397800.1	Wheat	cytosol	72.73	11.65
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	72.73	11.65
TraesCS2B01G281300.1	Wheat	mitochondrion	72.73	11.65
AT3G24830.1	Thale cress	cytosol	72.73	11.65
CDY52083	Canola	cytosol	72.73	11.65
CDX85362	Canola	cytosol	72.73	11.65
Bra015088.1-P	Field mustard	cytosol	72.73	11.65
Bra020681.1-P	Field mustard	cytosol	72.73	11.65
Bra036161.1-P	Field mustard	cytosol	72.73	11.65
Bra013239.1-P	Field mustard	cytosol	72.73	11.65
Bra036669.1-P	Field mustard	cytosol	72.73	11.65
CDY39786	Canola	cytosol	72.73	11.65
CDX77383	Canola	cytosol	72.73	11.65
CDX86281	Canola	cytosol	72.73	11.65
AT5G48760.1	Thale cress	cytosol	72.73	11.65
AT4G13170.1	Thale cress	cytosol	72.73	11.65
CDY33947	Canola	cytosol	72.73	11.65
CDY15113	Canola	cytosol	72.73	11.65
CDY05663	Canola	cytosol	72.73	11.65
CDY03292	Canola	cytosol	72.73	11.65
CDY00046	Canola	cytosol	72.73	11.65
CDX93039	Canola	cytosol	72.73	11.65
PGSC0003DMT400019917	Potato	mitochondrion	69.7	11.16
PGSC0003DMT400040760	Potato	mitochondrion, plastid	69.7	11.16
HORVU2Hr1G063880.5	Barley	mitochondrion	69.7	11.16
Solyc05g053670.2.1	Tomato	nucleus	69.7	11.16
Solyc12g098330.1.1	Tomato	nucleus, unclear	69.7	11.16
TraesCS2A01G260700.1	Wheat	golgi, unclear	69.7	11.16
TraesCS2D01G263000.1	Wheat	mitochondrion	69.7	11.16
AT3G07110.2	Thale cress	cytosol	69.7	11.11
PGSC0003DMT400076290	Potato	cytosol, plastid	66.67	10.68
Zm00001d013252_P001	Maize	plasma membrane	66.67	10.68
EES17613	Sorghum	mitochondrion	66.67	10.68
EER93429	Sorghum	cytosol	66.67	10.68
Solyc09g091740.2.1	Tomato	nucleus	66.67	10.19
Zm00001d034059_P006	Maize	cytosol	69.7	9.66
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	3.03	0.92
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	0.0	0.0
GSMUA_Achr3P13700_001	Banana	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08770_001	EnsemblPlants:GSMUA_Achr6T08770_001	EnsemblPlantsGene:GSMUA_Achr6G08770_001	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036899	InterPro:Ribosomal_L13_sf	UniParc:UPI0002956469	UniProt:M0T5C6	MapMan:35.2	:

Description

60S ribosomal protein L13a-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08770_001]

Coordinates

chr6:-:5812865..5813051

Molecular Weight (calculated)

3900.9 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.142

Length

33 amino acids

Sequence
(BLAST)

1: MKRMVISDAL KCKFQPVHRY CLFGRLSSEV GWN

Best Arabidopsis Sequence Match ( AT5G48760.1 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.