Factsheet for Solyc12g098330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019917	Potato	mitochondrion	99.51	99.51
Solyc05g053670.2.1	Tomato	nucleus	99.51	99.51
Solyc09g091740.2.1	Tomato	nucleus	96.12	91.67
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	90.78	90.78
VIT_15s0021g00760.t01	Wine grape	mitochondrion	50.0	89.57
EES17613	Sorghum	mitochondrion	88.83	88.83
VIT_07s0005g06490.t01	Wine grape	cytosol	88.83	88.83
CDY52083	Canola	cytosol	88.35	88.35
EER93429	Sorghum	cytosol	88.35	88.35
CDX77383	Canola	cytosol	88.35	88.35
GSMUA_Achr10P...	Banana	mitochondrion	77.18	88.33
Bra036669.1-P	Field mustard	cytosol	87.86	87.86
Bra015088.1-P	Field mustard	cytosol	87.86	87.86
CDY03292	Canola	cytosol	87.86	87.86
AT5G48760.1	Thale cress	cytosol	87.86	87.86
CDY39786	Canola	cytosol	87.86	87.86
CDX93039	Canola	cytosol	87.38	87.38
Bra013239.1-P	Field mustard	cytosol	87.38	87.38
CDY15113	Canola	cytosol	87.38	87.38
AT4G13170.1	Thale cress	cytosol	87.38	87.38
GSMUA_Achr6P15590_001	Banana	mitochondrion	76.21	87.22
GSMUA_Achr6P23390_001	Banana	cytosol	59.22	87.14
Zm00001d013252_P001	Maize	plasma membrane	86.89	86.89
AT3G24830.1	Thale cress	cytosol	86.89	86.89
GSMUA_Achr6P08790_001	Banana	cytosol	58.74	86.43
CDX85362	Canola	cytosol	86.41	86.41
CDX86281	Canola	cytosol	86.41	86.41
Bra036161.1-P	Field mustard	cytosol	86.41	86.41
CDY33947	Canola	cytosol	86.41	86.41
CDY00046	Canola	cytosol	86.41	86.41
CDY05663	Canola	cytosol	86.41	86.41
GSMUA_Achr3P17910_001	Banana	mitochondrion	75.24	86.11
AT3G07110.2	Thale cress	cytosol	86.41	85.99
Bra020681.1-P	Field mustard	cytosol	85.92	85.92
TraesCS5D01G402800.1	Wheat	cytosol	85.92	85.92
HORVU2Hr1G063880.5	Barley	mitochondrion	85.92	85.92
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.92	85.92
KRH36792	Soybean	nucleus	85.44	85.44
KRH46742	Soybean	nucleus	85.44	85.44
TraesCS5B01G397800.1	Wheat	cytosol	85.44	85.44
KRH07489	Soybean	nucleus	84.95	84.95
TraesCS2B01G281300.1	Wheat	mitochondrion	84.95	84.95
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.98	83.98
KRH46743	Soybean	cytosol	83.5	83.5
KRH11781	Soybean	nucleus	82.52	82.52
TraesCS2D01G263000.1	Wheat	mitochondrion	82.52	82.52
GSMUA_Achr3P13700_001	Banana	mitochondrion	42.72	81.48
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	18.45	79.17
CDY19938	Canola	mitochondrion	43.69	78.95
Os11t0425800-01	Rice	mitochondrion	26.21	77.14
Zm00001d034059_P006	Maize	cytosol	88.35	76.47
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.16	69.7
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
Os03t0755700-00	Rice	nucleus	40.29	62.88

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR036899	UniProt:K4DHK7	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783
PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	EnsemblPlantsGene:Solyc12g098330.1	EnsemblPlants:Solyc12g098330.1.1	TIGRFAMs:TIGR01077	UniParc:UPI000276A06E	:

Description

No Description!

Coordinates

chr12:+:65878769..65881016

Molecular Weight (calculated)

23504.5 Da

IEP (calculated)

11.274

GRAVY (calculated)

-0.379

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGISAR RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKVY EGVPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGKLSSEV GWNHYDTIKE LENKRKERAQ VAYERRKQLA KLRVKAEKAA EEKLGPQLAV
201: IAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.