Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013239.1-P | Field mustard | cytosol | 96.12 | 96.12 |
| Bra036669.1-P | Field mustard | cytosol | 96.12 | 96.12 |
| CDX93039 | Canola | cytosol | 96.12 | 96.12 |
| CDY03292 | Canola | cytosol | 96.12 | 96.12 |
| CDY15113 | Canola | cytosol | 96.12 | 96.12 |
| CDY39786 | Canola | cytosol | 96.12 | 96.12 |
| CDX77383 | Canola | cytosol | 95.63 | 95.63 |
| CDY52083 | Canola | cytosol | 95.63 | 95.63 |
| Bra015088.1-P | Field mustard | cytosol | 95.15 | 95.15 |
| AT4G13170.1 | Thale cress | cytosol | 91.75 | 91.75 |
| AT3G07110.2 | Thale cress | cytosol | 91.75 | 91.3 |
| AT5G48760.1 | Thale cress | cytosol | 91.26 | 91.26 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 88.83 | 88.83 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 87.86 | 87.86 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 49.03 | 87.83 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 87.38 | 87.38 |
| KRH36792 | Soybean | nucleus | 87.38 | 87.38 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 86.89 | 86.89 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 86.89 | 86.89 |
| KRH07489 | Soybean | nucleus | 86.89 | 86.89 |
| Solyc05g053670.2.1 | Tomato | nucleus | 86.41 | 86.41 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 86.41 | 86.41 |
| KRH46742 | Soybean | nucleus | 86.41 | 86.41 |
| KRH11781 | Soybean | nucleus | 85.44 | 85.44 |
| KRH46743 | Soybean | cytosol | 84.95 | 84.95 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 82.52 | 84.58 |
| GSMUA_Achr10P... | Banana | mitochondrion | 73.79 | 84.44 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 73.3 | 83.89 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 73.3 | 83.89 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 56.8 | 83.57 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 83.5 | 83.5 |
| EER93429 | Sorghum | cytosol | 83.5 | 83.5 |
| EES17613 | Sorghum | mitochondrion | 83.01 | 83.01 |
| Zm00001d013252_P001 | Maize | plasma membrane | 83.01 | 83.01 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 56.31 | 82.86 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 82.52 | 82.52 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 82.04 | 82.04 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 82.04 | 82.04 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.55 | 81.55 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 81.55 | 81.55 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 81.55 | 81.55 |
| Solyc09g091740.2.1 | Tomato | nucleus | 85.44 | 81.48 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 40.29 | 76.85 |
| Os11t0425800-01 | Rice | mitochondrion | 25.73 | 75.71 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.65 | 72.73 |
| Zm00001d034059_P006 | Maize | cytosol | 83.98 | 72.69 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 16.5 | 70.83 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 33.5 | 63.3 |
| Os03t0755700-00 | Rice | nucleus | 38.84 | 60.61 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | EntrezGene:822081 | UniProt:A0A178V860 | ProteinID:AEE76951.1 | ArrayExpress:AT3G24830 |
| EnsemblPlantsGene:AT3G24830 | RefSeq:AT3G24830 | TAIR:AT3G24830 | RefSeq:AT3G24830-TAIR-G | EnsemblPlants:AT3G24830.1 | TAIR:AT3G24830.1 |
| EMBL:AY080870 | EMBL:AY150392 | Unigene:At.23983 | ProteinID:BAB02893.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0015934 |
| GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | GO:GO:0042788 |
| InterPro:IPR036899 | HAMAP:MF_01366 | RefSeq:NP_189127.1 | ProteinID:OAP01871.1 | PFAM:PF00572 | PIRSF:PIRSF002181 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | UniProt:Q9LRX8 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS |
| InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI000000181B | : |
Description
RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
Coordinates
chr3:+:9064525..9066180
Molecular Weight (calculated)
23460.4 Da
IEP (calculated)
11.023
GRAVY (calculated)
-0.341
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.