Factsheet for Bra013239.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G24830.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15113	Canola	cytosol	100.0	100.0
CDX93039	Canola	cytosol	100.0	100.0
Bra036669.1-P	Field mustard	cytosol	97.09	97.09
Bra015088.1-P	Field mustard	cytosol	96.6	96.6
AT3G24830.1	Thale cress	cytosol	96.12	96.12
Bra036161.1-P	Field mustard	cytosol	93.2	93.2
Bra020681.1-P	Field mustard	cytosol	92.72	92.72
VIT_07s0005g06490.t01	Wine grape	cytosol	87.86	87.86
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	87.86	87.86
PGSC0003DMT400019917	Potato	mitochondrion	87.86	87.86
KRH36792	Soybean	nucleus	87.86	87.86
Solyc12g098330.1.1	Tomato	nucleus, unclear	87.38	87.38
PGSC0003DMT400040760	Potato	mitochondrion, plastid	87.38	87.38
KRH07489	Soybean	nucleus	87.38	87.38
VIT_15s0021g00760.t01	Wine grape	mitochondrion	48.54	86.96
Solyc05g053670.2.1	Tomato	nucleus	86.89	86.89
PGSC0003DMT400076290	Potato	cytosol, plastid	86.89	86.89
KRH46742	Soybean	nucleus	86.41	86.41
GSMUA_Achr10P...	Banana	mitochondrion	75.24	86.11
GSMUA_Achr6P15590_001	Banana	mitochondrion	74.76	85.56
GSMUA_Achr3P17910_001	Banana	mitochondrion	74.76	85.56
KRH11781	Soybean	nucleus	85.44	85.44
KRH46743	Soybean	cytosol	84.95	84.95
PGSC0003DMT400096774	Potato	mitochondrion, plastid	82.52	84.58
HORVU2Hr1G063880.5	Barley	mitochondrion	84.47	84.47
EER93429	Sorghum	cytosol	83.98	83.98
EES17613	Sorghum	mitochondrion	83.98	83.98
GSMUA_Achr6P23390_001	Banana	cytosol	56.8	83.57
Zm00001d013252_P001	Maize	plasma membrane	83.5	83.5
TraesCS2B01G281300.1	Wheat	mitochondrion	83.5	83.5
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.01	83.01
TraesCS2D01G263000.1	Wheat	mitochondrion	83.01	83.01
GSMUA_Achr6P08790_001	Banana	cytosol	56.31	82.86
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	82.52	82.52
TraesCS5B01G397800.1	Wheat	cytosol	82.52	82.52
TraesCS5D01G402800.1	Wheat	cytosol	82.52	82.52
Solyc09g091740.2.1	Tomato	nucleus	85.92	81.94
GSMUA_Achr3P13700_001	Banana	mitochondrion	40.78	77.78
Os11t0425800-01	Rice	mitochondrion	26.21	77.14
Zm00001d034059_P006	Maize	cytosol	84.47	73.11
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	16.99	72.92
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.65	72.73
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	33.98	64.22
Os03t0755700-00	Rice	nucleus	38.84	60.61

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	EnsemblPlantsGene:Bra013239	EnsemblPlants:Bra013239.1	EnsemblPlants:Bra013239.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036899	UniProt:M4D9S9	HAMAP:MF_01366
PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13
InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI0001BA855E
SEG:seg	:	:	:	:	:

Description

AT3G24830 (E=5e-102) | 60S ribosomal protein L13A (RPL13aB)

Coordinates

chrA03:+:19706259..19707575

Molecular Weight (calculated)

23569.6 Da

IEP (calculated)

11.151

GRAVY (calculated)

-0.380

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGLCSK RVVVDARHHM LGRLASIIAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYM RFMRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ AVYERKKQLS KLRTKAEKVA EEKLGSQLDV
201: LAPIKY

Best Arabidopsis Sequence Match ( AT3G24830.1 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY

Arabidopsis Description

RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.