Factsheet for PGSC0003DMT400019917

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040760	Potato	mitochondrion, plastid	99.51	99.51
Solyc12g098330.1.1	Tomato	nucleus, unclear	99.51	99.51
PGSC0003DMT400076290	Potato	cytosol, plastid	97.57	97.57
PGSC0003DMT400096774	Potato	mitochondrion, plastid	93.69	96.02
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	91.26	91.26
VIT_15s0021g00760.t01	Wine grape	mitochondrion	50.49	90.43
VIT_07s0005g06490.t01	Wine grape	cytosol	89.32	89.32
CDX77383	Canola	cytosol	88.83	88.83
EES17613	Sorghum	mitochondrion	88.83	88.83
CDY52083	Canola	cytosol	88.83	88.83
Bra015088.1-P	Field mustard	cytosol	88.35	88.35
AT5G48760.1	Thale cress	cytosol	88.35	88.35
Bra036669.1-P	Field mustard	cytosol	88.35	88.35
EER93429	Sorghum	cytosol	88.35	88.35
CDY03292	Canola	cytosol	88.35	88.35
CDY39786	Canola	cytosol	88.35	88.35
GSMUA_Achr10P...	Banana	mitochondrion	77.18	88.33
CDY15113	Canola	cytosol	87.86	87.86
CDX93039	Canola	cytosol	87.86	87.86
Bra013239.1-P	Field mustard	cytosol	87.86	87.86
AT3G24830.1	Thale cress	cytosol	87.38	87.38
GSMUA_Achr6P15590_001	Banana	mitochondrion	76.21	87.22
GSMUA_Achr6P23390_001	Banana	cytosol	59.22	87.14
CDY33947	Canola	cytosol	86.89	86.89
CDY05663	Canola	cytosol	86.89	86.89
CDY00046	Canola	cytosol	86.89	86.89
CDX86281	Canola	cytosol	86.89	86.89
CDX85362	Canola	cytosol	86.89	86.89
Bra036161.1-P	Field mustard	cytosol	86.89	86.89
Zm00001d013252_P001	Maize	plasma membrane	86.89	86.89
AT4G13170.1	Thale cress	cytosol	86.89	86.89
AT3G07110.2	Thale cress	cytosol	86.89	86.47
GSMUA_Achr6P08790_001	Banana	cytosol	58.74	86.43
Bra020681.1-P	Field mustard	cytosol	86.41	86.41
GSMUA_Achr3P17910_001	Banana	mitochondrion	75.24	86.11
TraesCS5D01G402800.1	Wheat	cytosol	85.92	85.92
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.92	85.92
HORVU2Hr1G063880.5	Barley	mitochondrion	85.92	85.92
KRH36792	Soybean	nucleus	85.44	85.44
KRH46742	Soybean	nucleus	85.44	85.44
TraesCS5B01G397800.1	Wheat	cytosol	85.44	85.44
TraesCS2B01G281300.1	Wheat	mitochondrion	84.95	84.95
KRH07489	Soybean	nucleus	84.95	84.95
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.98	83.98
KRH46743	Soybean	cytosol	83.5	83.5
KRH11781	Soybean	nucleus	82.52	82.52
TraesCS2D01G263000.1	Wheat	mitochondrion	82.52	82.52
GSMUA_Achr3P13700_001	Banana	mitochondrion	42.72	81.48
CDY19938	Canola	mitochondrion	44.17	79.82
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	18.45	79.17
Os11t0425800-01	Rice	mitochondrion	26.21	77.14
Zm00001d034059_P006	Maize	cytosol	88.35	76.47
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.16	69.7
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
Os03t0755700-00	Rice	nucleus	40.29	62.88

Protein Annotations

EntrezGene:102587601	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	InterPro:IPR036899	UniProt:M1ACS2	HAMAP:MF_01366	PFAM:PF00572	EnsemblPlantsGene:PGSC0003DMG400007707
PGSC:PGSC0003DMG400007707	EnsemblPlants:PGSC0003DMT400019917	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
UniParc:UPI0002959951	RefSeq:XP_006349931.1	:	:	:	:

Description

60S ribosomal protein L13a [Source:PGSC_GENE;Acc:PGSC0003DMG400007707]

Coordinates

chr12:+:59140668..59143228

Molecular Weight (calculated)

23488.5 Da

IEP (calculated)

11.274

GRAVY (calculated)

-0.366

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGISAR RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKVY EGVPPPYDKI KRMVIPDALK VLRLQAGHKY CLLGKLSSEV GWNHYDTIKE LENKRKERAQ VAYERRKQLA KLRVKAEKAA EEKLGPQLAV
201: IAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.