CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	29.82	70.83
GSMUA_Achr6P23390_001	Banana	cytosol	75.44	61.43
GSMUA_Achr6P08790_001	Banana	cytosol	74.56	60.71
VIT_15s0021g00760.t01	Wine grape	mitochondrion	55.26	54.78
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	14.91	51.52
Bra036161.1-P	Field mustard	cytosol	92.98	51.46
CDY00046	Canola	cytosol	92.98	51.46
CDX86281	Canola	cytosol	92.98	51.46
CDY05663	Canola	cytosol	92.11	50.97
CDY33947	Canola	cytosol	92.11	50.97
CDX85362	Canola	cytosol	92.11	50.97
AT5G48760.1	Thale cress	cytosol	89.47	49.51
GSMUA_Achr6P15590_001	Banana	mitochondrion	76.32	48.33
GSMUA_Achr10P...	Banana	mitochondrion	76.32	48.33
CDX77383	Canola	cytosol	86.84	48.06
CDY52083	Canola	cytosol	86.84	48.06
CDY15113	Canola	cytosol	85.96	47.57
CDX93039	Canola	cytosol	85.96	47.57
GSMUA_Achr3P17910_001	Banana	mitochondrion	74.56	47.22
CDY03292	Canola	cytosol	85.09	47.09
CDY39786	Canola	cytosol	85.09	47.09
KRH36792	Soybean	nucleus	81.58	45.15
KRH07489	Soybean	nucleus	81.58	45.15
VIT_07s0005g06490.t01	Wine grape	cytosol	81.58	45.15
KRH46742	Soybean	nucleus	80.7	44.66
PGSC0003DMT400019917	Potato	mitochondrion	79.82	44.17
KRH46743	Soybean	cytosol	78.95	43.69
PGSC0003DMT400040760	Potato	mitochondrion, plastid	78.95	43.69
Solyc12g098330.1.1	Tomato	nucleus, unclear	78.95	43.69
PGSC0003DMT400096774	Potato	mitochondrion, plastid	76.32	43.28
Solyc05g053670.2.1	Tomato	nucleus	78.07	43.2
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	78.07	43.2
KRH11781	Soybean	nucleus	77.19	42.72
PGSC0003DMT400076290	Potato	cytosol, plastid	77.19	42.72
EER93429	Sorghum	cytosol	76.32	42.23
EES17613	Sorghum	mitochondrion	76.32	42.23
HORVU2Hr1G063880.5	Barley	mitochondrion	75.44	41.75
Os03t0755700-00	Rice	nucleus	47.37	40.91
TraesCS2B01G281300.1	Wheat	mitochondrion	73.68	40.78
Zm00001d013252_P001	Maize	plasma membrane	73.68	40.78
TraesCS2A01G260700.1	Wheat	golgi, unclear	72.81	40.29
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	72.81	40.29
TraesCS5D01G402800.1	Wheat	cytosol	72.81	40.29
Solyc09g091740.2.1	Tomato	nucleus	75.44	39.81
TraesCS2D01G263000.1	Wheat	mitochondrion	71.93	39.81
TraesCS5B01G397800.1	Wheat	cytosol	71.93	39.81
Zm00001d034059_P006	Maize	cytosol	76.32	36.55
Os11t0425800-01	Rice	mitochondrion	18.42	30.0
GSMUA_Achr3P13700_001	Banana	mitochondrion	23.68	25.0
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	18.42	19.27

Protein Annotations

Gene3D:3.90.1180.10	MapMan:35.1	GO:A0A078G5F9	UniProt:A0A078G5F9	EnsemblPlants:CDY19938	ProteinID:CDY19938
ProteinID:CDY19938.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00009742001
InterPro:IPR036899	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	UniParc:UPI0004EDC43D	:	:	:	:

Description

BnaA09g03130DBnaA09g03130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5F9]

Coordinates

chrLK032102:+:38940..40779

Molecular Weight (calculated)

13417.6 Da

IEP (calculated)

10.939

GRAVY (calculated)

-0.683

Length

114 amino acids

Sequence
(BLAST)

001: MNTKPSHGPI HFRAFSKIFW RTVRGMIPHK TKRWLSLMLS KLQAGHKYCL LGRLSSEVGW NHYDTIKELE TKRKERSQVV YERKKQLNKL RAKAEKVAEE
101: KLGAQLEILA PVKY

Best Arabidopsis Sequence Match ( AT3G07110.1 )
(BLAST)

001: MVSGSGICAK RVVVDARHHM LGRLASVVAK DLLNGQNIVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: ANALARLKVF EGVPTPYDKI KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LENKRKERAQ AVYERKKQLS KLRAKAEKVA EEKLGSQLDV
201: LAPVKY

Arabidopsis Description

Ribosomal protein L13 family protein [Source:UniProtKB/TrEMBL;Acc:F4JD96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.