Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10985.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 92.75 | 94.81 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 85.51 | 64.48 |
| GSMUA_Achr10P... | Banana | cytosol | 45.65 | 57.8 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 44.93 | 52.1 |
| Bra034157.1-P | Field mustard | extracellular | 38.41 | 50.96 |
| CDX73898 | Canola | extracellular | 38.41 | 50.96 |
| PGSC0003DMT400046104 | Potato | cytosol | 41.3 | 50.89 |
| CDY00710 | Canola | extracellular | 37.68 | 50.0 |
| Solyc06g050760.1.1 | Tomato | cytosol | 41.3 | 49.57 |
| AT3G10985.1 | Thale cress | plastid | 38.41 | 48.18 |
| TraesCS4D01G189800.1 | Wheat | plastid | 94.2 | 47.97 |
| Solyc06g048820.1.1 | Tomato | cytosol | 36.23 | 46.3 |
| Zm00001d047696_P001 | Maize | cytosol | 60.87 | 41.38 |
| HORVU2Hr1G015360.4 | Barley | cytosol | 51.45 | 39.23 |
| Os03t0299600-01 | Rice | mitochondrion | 62.32 | 37.72 |
| KRG97665 | Soybean | cytosol | 39.13 | 34.18 |
| OQU92745 | Sorghum | plastid | 60.87 | 32.18 |
| CDY00985 | Canola | cytosol | 39.86 | 32.16 |
| KRH30153 | Soybean | cytosol | 33.33 | 31.29 |
| KRH31209 | Soybean | cytosol | 38.41 | 30.81 |
| Zm00001d028808_P001 | Maize | plastid | 57.25 | 30.15 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 42.03 | 30.05 |
| Bra029887.1-P | Field mustard | cytosol | 38.41 | 28.19 |
| OQU92744 | Sorghum | cytosol | 59.42 | 27.24 |
| KRG98193 | Soybean | cytosol | 31.88 | 26.99 |
| KRH17129 | Soybean | cytosol | 30.43 | 26.25 |
| CDY08559 | Canola | cytosol, plasma membrane | 38.41 | 25.73 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 36.23 | 23.47 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 36.96 | 22.87 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G054970.1 | EnsemblPlantsGene:HORVU4Hr1G054970 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 | PANTHER:PTHR33703:SF4 |
| PFAM:PF07107 | SEG:seg | SUPFAM:SSF54427 | UniParc:UPI0002953047 | UniProt:M0YLG2 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr4H:-:460970793..460972674
Molecular Weight (calculated)
14578.0 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.254
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRLLTGAGT NDEFRFCPRS VDAFGSTVVA EGSADGAGQL LYWVHAWTVG PDGVITQLRE YFNTDLTVTR LSAAAATKNA SASSPTHSSS SSTSSSPSSS
101: TSSGLSSPAH TPKWPKCLWQ SRRTDRARKS LPGLVLAI
101: TSSGLSSPAH TPKWPKCLWQ SRRTDRARKS LPGLVLAI
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.