Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10985.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029887.1-P | Field mustard | cytosol | 87.86 | 96.28 |
| CDY00985 | Canola | cytosol | 74.27 | 89.47 |
| CDX73898 | Canola | extracellular | 44.17 | 87.5 |
| CDY00710 | Canola | extracellular | 43.2 | 85.58 |
| AT3G10985.1 | Thale cress | plastid | 37.38 | 70.0 |
| KRG97665 | Soybean | cytosol | 42.23 | 55.06 |
| Solyc06g048820.1.1 | Tomato | cytosol | 28.16 | 53.7 |
| TraesCS2D01G091300.1 | Wheat | mitochondrion | 25.24 | 53.61 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 25.73 | 52.48 |
| Solyc06g050760.1.1 | Tomato | cytosol | 29.13 | 52.17 |
| PGSC0003DMT400046104 | Potato | cytosol | 28.16 | 51.79 |
| KRH31209 | Soybean | cytosol | 43.2 | 51.74 |
| TraesCS2A01G092200.1 | Wheat | mitochondrion | 24.76 | 50.49 |
| GSMUA_Achr10P... | Banana | cytosol | 23.79 | 44.95 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 25.73 | 44.54 |
| HORVU2Hr1G015360.4 | Barley | cytosol | 36.89 | 41.99 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 43.2 | 41.78 |
| Zm00001d038029_P001 | Maize | mitochondrion | 22.33 | 41.07 |
| Os07t0691300-01 | Rice | mitochondrion | 19.42 | 40.4 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 34.95 | 39.34 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 25.73 | 39.26 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 25.73 | 38.41 |
| CDY04831 | Canola | cytosol | 29.13 | 37.5 |
| Zm00001d047696_P001 | Maize | cytosol | 36.89 | 37.44 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 33.01 | 35.23 |
| KXG37021 | Sorghum | cytosol | 35.44 | 34.43 |
| Os05t0342000-00 | Rice | cytosol, plastid | 33.98 | 34.31 |
| Os03t0299600-01 | Rice | mitochondrion | 36.41 | 32.89 |
| EES19325 | Sorghum | cytosol | 35.92 | 29.96 |
| OQU92745 | Sorghum | plastid | 37.38 | 29.5 |
| TraesCS4D01G189800.1 | Wheat | plastid | 38.35 | 29.15 |
| Zm00001d022569_P001 | Maize | cytosol | 33.98 | 28.81 |
| Zm00001d028808_P001 | Maize | plastid | 35.44 | 27.86 |
| OQU92744 | Sorghum | cytosol | 36.89 | 25.25 |
Protein Annotations
| EnsemblPlants:CDY08559 | EnsemblPlantsGene:GSBRNA2T00000342001 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 |
| PANTHER:PTHR33703:SF4 | PFAM:PF07107 | ProteinID:CDY08559 | ProteinID:CDY08559.1 | SUPFAM:SSF54427 | UniParc:UPI0004EF2329 |
| UniProt:A0A078F697 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g27950DBnaA05g27950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F697]
Coordinates
chrLK031986:-:709199..710779
Molecular Weight (calculated)
22566.8 Da
IEP (calculated)
7.745
GRAVY (calculated)
0.018
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTDGHSALH EHFALTCVMV IVHYTAVETS IIGWRGQHTQ TEQIFTTSKF KLDTLADSET KNRDVVLKLY DALRSRDVDS VHRTLTPDLD YWFHGPPPHQ
101: FLMRTLTGVS PPFQFSPLSV VSFGSTVIAG GCDAASSVSW IHAWTVSHGV ITQVREYSNT SLTVTRIGSV VAGRSAEIRA SHCPSVWESK FSGRAGKSVP
201: GLVLAI
101: FLMRTLTGVS PPFQFSPLSV VSFGSTVIAG GCDAASSVSW IHAWTVSHGV ITQVREYSNT SLTVTRIGSV VAGRSAEIRA SHCPSVWESK FSGRAGKSVP
201: GLVLAI
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.