Factsheet for Zm00001d022569_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10985.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G10985.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G10985.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G10985.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G10985.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G10985.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G10985.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G10985.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G091300.1	Wheat	mitochondrion	30.45	76.29
TraesCS2A01G092200.1	Wheat	mitochondrion	30.45	73.27
TraesCS2B01G107100.1	Wheat	mitochondrion	30.45	73.27
KXG37021	Sorghum	cytosol	58.85	67.45
HORVU2Hr1G015360.4	Barley	cytosol	48.56	65.19
Os07t0691300-01	Rice	mitochondrion	25.1	61.62
HORVU2Hr1G015410.2	Barley	cytosol	42.8	53.89
Zm00001d047696_P001	Maize	cytosol	41.15	49.26
GSMUA_Achr10P...	Banana	cytosol	21.81	48.62
KRG97665	Soybean	cytosol	30.45	46.84
Zm00001d038029_P001	Maize	mitochondrion	20.99	45.54
CDY00710	Canola	extracellular	19.34	45.19
CDX73898	Canola	extracellular	19.34	45.19
Bra034157.1-P	Field mustard	extracellular	18.93	44.23
KRH31209	Soybean	cytosol	30.45	43.02
GSMUA_Achr6P15760_001	Banana	cytosol	20.99	42.86
PGSC0003DMT400046104	Potato	cytosol	19.75	42.86
Solyc06g050760.1.1	Tomato	cytosol	20.16	42.61
Solyc06g048820.1.1	Tomato	cytosol	18.52	41.67
KRH17129	Soybean	cytosol	27.16	41.25
KRH30153	Soybean	cytosol	24.69	40.82
CDY00985	Canola	cytosol	28.4	40.35
AT3G10985.1	Thale cress	plastid	18.11	40.0
Zm00001d028808_P001	Maize	plastid	42.8	39.69
KRG98193	Soybean	cytosol	25.93	38.65
Bra029887.1-P	Field mustard	cytosol	27.98	36.17
VIT_06s0004g07550.t01	Wine grape	extracellular, vacuole	32.92	35.87
PGSC0003DMT400017004	Potato	extracellular, plasma membrane, plastid	30.45	34.74
CDY08559	Canola	cytosol, plasma membrane	28.81	33.98

Protein Annotations

EnsemblPlants:Zm00001d022569_P001	EnsemblPlants:Zm00001d022569_T001	EnsemblPlantsGene:Zm00001d022569	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf	InterPro:Wun1-like
PANTHER:PTHR33703	PFAM:PF07107	ProteinID:ONM61030.1	SEG:seg	SUPFAM:SSF54427	UniParc:UPI00084486F2
UniProt:A0A1D6IP49	MapMan:35.2	:	:	:	:

Description

senescence associated gene 20

Coordinates

chr7:+:180129805..180131184

Molecular Weight (calculated)

25962.6 Da

IEP (calculated)

4.928

GRAVY (calculated)

-0.100

Length

243 amino acids

Sequence
(BLAST)

001: MNLPAANLPV GMTFAPHAED PSVERQSATT IELASCDAES PFASPAPLFA LAAMANGAEA AGGETERIDL LAASKLEKGG ATAEGDEIGI DPAAETPEQR
101: NKFLVLRLYE ALNARDHAAV QSLLAPDLEW WFHGPPKHQQ HMMRLLTTTT TTTTTGSFRF VPRSVDALAA SSGTVIAEGH ERGCYWVHAW TVGPDGVITQ
201: LREYFNTDLT VTRLAAAVAA KCVWQSRRPD SATNSLPGLL LAL

Best Arabidopsis Sequence Match ( AT5G01740.1 )
(BLAST)

001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI

Arabidopsis Description

AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.