Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10985.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G091300.1 | Wheat | mitochondrion | 51.38 | 95.88 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 51.93 | 93.07 |
| TraesCS2A01G092200.1 | Wheat | mitochondrion | 47.51 | 85.15 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 72.38 | 67.88 |
| Os07t0691300-01 | Rice | mitochondrion | 33.7 | 61.62 |
| KXG37021 | Sorghum | cytosol | 65.19 | 55.66 |
| GSMUA_Achr10P... | Banana | cytosol | 31.49 | 52.29 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 39.23 | 51.45 |
| Bra034157.1-P | Field mustard | extracellular | 28.73 | 50.0 |
| KRG97665 | Soybean | cytosol | 43.09 | 49.37 |
| AT3G10985.1 | Thale cress | plastid | 29.83 | 49.09 |
| CDX73898 | Canola | extracellular | 28.18 | 49.04 |
| CDY00710 | Canola | extracellular | 28.18 | 49.04 |
| Zm00001d022569_P001 | Maize | cytosol | 65.19 | 48.56 |
| Solyc06g050760.1.1 | Tomato | cytosol | 30.39 | 47.83 |
| PGSC0003DMT400046104 | Potato | cytosol | 29.28 | 47.32 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 30.94 | 47.06 |
| Solyc06g048820.1.1 | Tomato | cytosol | 27.62 | 46.3 |
| KRH31209 | Soybean | cytosol | 43.65 | 45.93 |
| CDY00985 | Canola | cytosol | 42.54 | 45.03 |
| KRH30153 | Soybean | cytosol | 35.91 | 44.22 |
| KRH17129 | Soybean | cytosol | 38.12 | 43.12 |
| KRG98193 | Soybean | cytosol | 37.02 | 41.1 |
| Bra029887.1-P | Field mustard | cytosol | 41.99 | 40.43 |
| CDY08559 | Canola | cytosol, plasma membrane | 41.99 | 36.89 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 43.09 | 36.62 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 43.65 | 35.43 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G015360.4 | EnsemblPlantsGene:HORVU2Hr1G015360 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PFAM:PF07107 |
| SUPFAM:SSF54427 | UniParc:UPI000B4704FF | UniProt:A0A287H5U5 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:34094277..34095309
Molecular Weight (calculated)
19540.0 Da
IEP (calculated)
7.837
GRAVY (calculated)
-0.199
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: SAPRGHETEE QRNKFLVLRL YEALNARDHA AVHSLLAPDL EWWFHGPPAH QHMMRLLTGG TSPASSSFIF QPRSVDAFGS TVIAEGVDDK ATKAYWVHAW
101: TXXXXAFGST VIAEGVDDKA KAYWVHAWTV GGDGVITQLR EYFNTDLTVT RLAAAAASKC VWQSRRPDRA RNSLPGLVLA L
101: TXXXXAFGST VIAEGVDDKA KAYWVHAWTV GGDGVITQLR EYFNTDLTVT RLAAAAASKC VWQSRRPDRA RNSLPGLVLA L
001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
Arabidopsis Description
AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.