Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- plastid 2
- cytosol 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10985.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G10985.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034157.1-P | Field mustard | extracellular | 51.6 | 93.27 |
| CDY08559 | Canola | cytosol, plasma membrane | 96.28 | 87.86 |
| AT3G10985.1 | Thale cress | plastid | 40.96 | 70.0 |
| KRG97665 | Soybean | cytosol | 46.28 | 55.06 |
| Solyc06g048820.1.1 | Tomato | cytosol | 30.85 | 53.7 |
| TraesCS2D01G091300.1 | Wheat | mitochondrion | 27.66 | 53.61 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 28.19 | 52.48 |
| Solyc06g050760.1.1 | Tomato | cytosol | 31.91 | 52.17 |
| PGSC0003DMT400046104 | Potato | cytosol | 30.85 | 51.79 |
| KRH31209 | Soybean | cytosol | 47.34 | 51.74 |
| TraesCS2A01G092200.1 | Wheat | mitochondrion | 27.13 | 50.49 |
| GSMUA_Achr10P... | Banana | cytosol | 26.06 | 44.95 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 28.19 | 44.54 |
| HORVU2Hr1G015360.4 | Barley | cytosol | 40.43 | 41.99 |
| Zm00001d038029_P001 | Maize | mitochondrion | 24.47 | 41.07 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 46.28 | 40.85 |
| Os07t0691300-01 | Rice | mitochondrion | 21.28 | 40.4 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 38.3 | 39.34 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 28.19 | 39.26 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 28.19 | 38.41 |
| Bra028909.1-P | Field mustard | cytosol | 32.45 | 38.12 |
| Zm00001d047696_P001 | Maize | cytosol | 40.43 | 37.44 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 36.17 | 35.23 |
| Os05t0342000-00 | Rice | cytosol, plastid | 37.23 | 34.31 |
| Os03t0299600-01 | Rice | mitochondrion | 40.43 | 33.33 |
| KXG37021 | Sorghum | cytosol | 37.23 | 33.02 |
| EES19325 | Sorghum | cytosol | 38.83 | 29.55 |
| OQU92745 | Sorghum | plastid | 40.43 | 29.12 |
| TraesCS4D01G189800.1 | Wheat | plastid | 41.49 | 28.78 |
| Zm00001d022569_P001 | Maize | cytosol | 36.17 | 27.98 |
| Zm00001d028808_P001 | Maize | plastid | 38.83 | 27.86 |
| OQU92744 | Sorghum | cytosol | 40.43 | 25.25 |
Protein Annotations
| EnsemblPlants:Bra029887.1 | EnsemblPlants:Bra029887.1-P | EnsemblPlantsGene:Bra029887 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like |
| PANTHER:PTHR33703 | PANTHER:PTHR33703:SF4 | PFAM:PF07107 | SUPFAM:SSF54427 | UniParc:UPI0002547758 | UniProt:M4EM67 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT3G10985 (E=3e-040) SAG20, WI12, ATWI-12 | SAG20 (SENESCENCE ASSOCIATED GENE 20)
Coordinates
chrA05:-:21858548..21859626
Molecular Weight (calculated)
20683.6 Da
IEP (calculated)
6.952
GRAVY (calculated)
-0.003
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCVMVIVHY TAVETSIIGW RGQHTQTEQL FQELDTLADS ETKNRDVVLK LYDALRSRDV DSVHRTLTPD LDYWFHGPPP HQFLMRTLPG VSPPFQFSPL
101: SVVSFGSTVI AEGCDAASSV SWIHAWTVSH GVITQVREYS NTSLTVTRIG SVVAGRSAEI RASHCPSVWE SKFSGRAGKS VPGLVLAI
101: SVVSFGSTVI AEGCDAASSV SWIHAWTVSH GVITQVREYS NTSLTVTRIG SVVAGRSAEI RASHCPSVWE SKFSGRAGKS VPGLVLAI
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.