Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 63.93 | 86.67 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 64.48 | 85.51 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 36.61 | 66.34 |
| TraesCS4D01G189800.1 | Wheat | plastid | 85.79 | 57.93 |
| PGSC0003DMT400046104 | Potato | cytosol | 32.24 | 52.68 |
| GSMUA_Achr10P... | Banana | cytosol | 31.15 | 52.29 |
| Zm00001d047696_P001 | Maize | cytosol | 57.92 | 52.22 |
| Os03t0299600-01 | Rice | mitochondrion | 62.84 | 50.44 |
| Solyc06g050760.1.1 | Tomato | cytosol | 31.69 | 50.43 |
| KRG97665 | Soybean | cytosol | 42.62 | 49.37 |
| Bra034157.1-P | Field mustard | extracellular | 27.87 | 49.04 |
| CDX73898 | Canola | extracellular | 27.87 | 49.04 |
| Solyc06g048820.1.1 | Tomato | cytosol | 28.42 | 48.15 |
| CDY00710 | Canola | extracellular | 27.32 | 48.08 |
| AT3G10985.1 | Thale cress | plastid | 27.87 | 46.36 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 30.05 | 46.22 |
| KRH31209 | Soybean | cytosol | 43.17 | 45.93 |
| CDY00985 | Canola | cytosol | 39.89 | 42.69 |
| OQU92745 | Sorghum | plastid | 60.66 | 42.53 |
| KRH30153 | Soybean | cytosol | 33.88 | 42.18 |
| Zm00001d028808_P001 | Maize | plastid | 57.38 | 40.08 |
| KRH17129 | Soybean | cytosol | 34.97 | 40.0 |
| KRG98193 | Soybean | cytosol | 34.43 | 38.65 |
| Bra029887.1-P | Field mustard | cytosol | 39.34 | 38.3 |
| OQU92744 | Sorghum | cytosol | 60.11 | 36.54 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 42.08 | 36.15 |
| TraesCS2B01G106800.1 | Wheat | cytosol | 30.6 | 36.13 |
| CDY08559 | Canola | cytosol, plasma membrane | 39.34 | 34.95 |
| TraesCS2B01G106700.1 | Wheat | extracellular | 20.77 | 34.86 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 40.44 | 33.18 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G188400.1 | EnsemblPlantsGene:TraesCS4B01G188400 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 |
| PANTHER:PTHR33703:SF4 | PFAM:PF07107 | SEG:seg | SUPFAM:SSF54427 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4B:+:409339245..409339796
Molecular Weight (calculated)
20197.8 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.273
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEQRGKFLV LRLYEALNSR NTRRAQDLLA PDLEWWFHGP PAHQHMMRLL TSAGTNTEFR FCPRSIDAFV STVIAEGSAD GADQLLYWVH AWTVGPDGVI
101: TQLREYFNTD LTVTRLSAAA ATKNVSAGSP SHFSSSSASS SPSSSTFSGL SSPAHTPKWP KCLWQSRRSN RVCKSLQGLV LAI
101: TQLREYFNTD LTVTRLSAAA ATKNVSAGSP SHFSSSSASS SPSSSTFSGL SSPAHTPKWP KCLWQSRRSN RVCKSLQGLV LAI
001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
Arabidopsis Description
AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.