Factsheet for PGSC0003DMT400046104

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050760.1.1	Tomato	cytosol	89.29	86.96
CDX73898	Canola	extracellular	54.46	58.65
Bra034157.1-P	Field mustard	extracellular	53.57	57.69
CDY00710	Canola	extracellular	53.57	57.69
AT3G10985.1	Thale cress	plastid	56.25	57.27
TraesCS2D01G091300.1	Wheat	mitochondrion	48.21	55.67
TraesCS2A01G092200.1	Wheat	mitochondrion	47.32	52.48
TraesCS2B01G107100.1	Wheat	mitochondrion	47.32	52.48
GSMUA_Achr10P...	Banana	cytosol	49.11	50.46
GSMUA_Achr6P15760_001	Banana	cytosol	53.57	50.42
Zm00001d038029_P001	Maize	mitochondrion	42.86	42.86
TraesCS4A01G115600.1	Wheat	mitochondrion	50.0	41.48
Os07t0691300-01	Rice	mitochondrion	36.61	41.41
HORVU4Hr1G054970.1	Barley	cytosol	50.89	41.3
KRG97665	Soybean	cytosol	58.04	41.14
KRH31209	Soybean	cytosol	58.04	37.79
PGSC0003DMT400017004	Potato	extracellular, plasma membrane, plastid	66.96	35.21
CDY00985	Canola	cytosol	53.57	35.09
TraesCS4B01G188400.1	Wheat	cytosol	52.68	32.24
Bra029887.1-P	Field mustard	cytosol	51.79	30.85
HORVU2Hr1G015360.4	Barley	cytosol	47.32	29.28
PGSC0003DMT400068444	Potato	cytosol	38.39	28.67
CDY08559	Canola	cytosol, plasma membrane	51.79	28.16
Zm00001d047696_P001	Maize	cytosol	46.43	25.62
Os03t0299600-01	Rice	mitochondrion	50.0	24.56
KXG37021	Sorghum	cytosol	43.75	23.11
Os05t0342000-00	Rice	cytosol, plastid	41.96	23.04
HORVU2Hr1G015410.2	Barley	cytosol	37.5	21.76
TraesCS4D01G189800.1	Wheat	plastid	50.89	21.03
OQU92745	Sorghum	plastid	48.21	20.69
Zm00001d022569_P001	Maize	cytosol	42.86	19.75
Zm00001d028808_P001	Maize	plastid	45.54	19.47
EES19325	Sorghum	cytosol	42.86	19.43
OQU92744	Sorghum	cytosol	48.21	17.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400046104	EnsemblPlantsGene:PGSC0003DMG400017895	EntrezGene:102602960	InterPro:NTF2-like_dom_sf	InterPro:Wound-induced_1/12_sub	InterPro:Wun1-like
PANTHER:PTHR33703	PANTHER:PTHR33703:SF11	PFAM:PF07107	PGSC:PGSC0003DMG400017895	PIRSF:PIRSF007948	RefSeq:XP_006353404.1
SUPFAM:SSF54427	UniParc:UPI00029526C1	UniProt:M1BIN3	MapMan:35.1	:	:

Description

Wound-induced protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017895]

Coordinates

chr6:-:30737912..30738798

Molecular Weight (calculated)

12369.6 Da

IEP (calculated)

6.223

GRAVY (calculated)

-0.093

Length

112 amino acids

Sequence
(BLAST)

001: MRILTGTANS DHYFFKFIPQ SIDAFGSTVL VEGCDPDRSI TWVHAWTVND GIITQVREYF NTSLTVTRLD NNNNCPSSDL SSIAPSRHCP SIWESSLPNR
101: VGKSVPGLVL AL

Best Arabidopsis Sequence Match ( AT3G10985.1 )
(BLAST)

001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI

Arabidopsis Description

SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.