Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10985.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT3G10985.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73898 | Canola | extracellular | 53.8 | 88.46 |
| CDY00710 | Canola | extracellular | 52.63 | 86.54 |
| CDY08559 | Canola | cytosol, plasma membrane | 89.47 | 74.27 |
| AT3G10985.1 | Thale cress | plastid | 46.2 | 71.82 |
| KRG97665 | Soybean | cytosol | 51.46 | 55.7 |
| TraesCS2D01G091300.1 | Wheat | mitochondrion | 30.99 | 54.64 |
| Solyc06g048820.1.1 | Tomato | cytosol | 33.92 | 53.7 |
| PGSC0003DMT400046104 | Potato | cytosol | 35.09 | 53.57 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 31.58 | 53.47 |
| Solyc06g050760.1.1 | Tomato | cytosol | 35.67 | 53.04 |
| TraesCS2A01G092200.1 | Wheat | mitochondrion | 30.41 | 51.49 |
| KRH31209 | Soybean | cytosol | 51.46 | 51.16 |
| GSMUA_Achr10P... | Banana | cytosol | 29.24 | 45.87 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 31.58 | 45.38 |
| HORVU2Hr1G015360.4 | Barley | cytosol | 45.03 | 42.54 |
| Zm00001d038029_P001 | Maize | mitochondrion | 27.49 | 41.96 |
| Os07t0691300-01 | Rice | mitochondrion | 23.98 | 41.41 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 51.46 | 41.31 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 32.16 | 40.74 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 42.69 | 39.89 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 32.16 | 39.86 |
| CDY04831 | Canola | cytosol | 35.67 | 38.12 |
| Zm00001d047696_P001 | Maize | cytosol | 44.44 | 37.44 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 40.35 | 35.75 |
| Os05t0342000-00 | Rice | cytosol, plastid | 42.11 | 35.29 |
| Os03t0299600-01 | Rice | mitochondrion | 45.03 | 33.77 |
| KXG37021 | Sorghum | cytosol | 40.94 | 33.02 |
| EES19325 | Sorghum | cytosol | 43.27 | 29.96 |
| TraesCS4D01G189800.1 | Wheat | plastid | 46.2 | 29.15 |
| OQU92745 | Sorghum | plastid | 44.44 | 29.12 |
| Zm00001d022569_P001 | Maize | cytosol | 40.35 | 28.4 |
| Zm00001d028808_P001 | Maize | plastid | 43.27 | 28.24 |
| OQU92744 | Sorghum | cytosol | 44.44 | 25.25 |
Protein Annotations
| EnsemblPlants:CDY00985 | EnsemblPlantsGene:GSBRNA2T00111004001 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 |
| PANTHER:PTHR33703:SF4 | PFAM:PF07107 | ProteinID:CDY00985 | ProteinID:CDY00985.1 | SUPFAM:SSF54427 | UniParc:UPI0004EC753A |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g42150D
Coordinates
chrLK031923:+:483512..484939
Molecular Weight (calculated)
18767.3 Da
IEP (calculated)
6.622
GRAVY (calculated)
-0.018
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLLYMNTL HDMCNELDTL ADSETKNRDV VLKLYDALRS RDVDSVHRTL TPDLDYWFHG PPPHQFLMRT LTGVSPPFEF SPLSVVSFGS TVIAEGCDAA
101: SSVSWIHAWT VSHGVITQVR EYSNTSLTVT RIGSVVSGRS AEIRASHCPS VWESKFSGRA GKSVPGLVLA I
101: SSVSWIHAWT VSHGVITQVR EYSNTSLTVT RIGSVVSGRS AEIRASHCPS VWESKFSGRA GKSVPGLVLA I
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.