Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034157.1-P | Field mustard | extracellular | 41.96 | 45.19 |
| CDX73898 | Canola | extracellular | 41.96 | 45.19 |
| CDY00710 | Canola | extracellular | 41.96 | 45.19 |
| AT3G10985.1 | Thale cress | plastid | 42.86 | 43.64 |
| Solyc06g048820.1.1 | Tomato | cytosol | 41.96 | 43.52 |
| PGSC0003DMT400046104 | Potato | cytosol | 42.86 | 42.86 |
| Solyc06g050760.1.1 | Tomato | cytosol | 42.86 | 41.74 |
| GSMUA_Achr10P... | Banana | cytosol | 40.18 | 41.28 |
| Os05t0342000-00 | Rice | cytosol, plastid | 75.0 | 41.18 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 42.86 | 40.34 |
| EES19325 | Sorghum | cytosol | 83.93 | 38.06 |
| Zm00001d047696_P001 | Maize | cytosol | 53.57 | 29.56 |
| KRG97665 | Soybean | cytosol | 41.07 | 29.11 |
| KRH30153 | Soybean | cytosol | 36.61 | 27.89 |
| CDY00985 | Canola | cytosol | 41.96 | 27.49 |
| KRH31209 | Soybean | cytosol | 40.18 | 26.16 |
| KRH17129 | Soybean | cytosol | 35.71 | 25.0 |
| Bra029887.1-P | Field mustard | cytosol | 41.07 | 24.47 |
| KRG98193 | Soybean | cytosol | 34.82 | 23.93 |
| CDY08559 | Canola | cytosol, plasma membrane | 41.07 | 22.33 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 41.96 | 22.07 |
| Zm00001d028808_P001 | Maize | plastid | 49.11 | 20.99 |
| Zm00001d022569_P001 | Maize | cytosol | 45.54 | 20.99 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 39.29 | 19.73 |
Protein Annotations
| EnsemblPlants:Zm00001d038029_P001 | EnsemblPlants:Zm00001d038029_T001 | EnsemblPlantsGene:Zm00001d038029 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 |
| PANTHER:PTHR33703:SF9 | PFAM:PF07107 | ProteinID:AQK85491.1 | SEG:seg | SUPFAM:SSF54427 | UniParc:UPI0004DEB240 |
| UniProt:A0A1D6M2T3 | MapMan:35.2 | : | : | : | : |
Description
senescence associated gene 20
Coordinates
chr6:+:145629023..145629361
Molecular Weight (calculated)
11616.1 Da
IEP (calculated)
11.031
GRAVY (calculated)
0.098
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLLTGTGAG AGLPFKIRSL DAFGPTVLAE GADATGALYW VHAWTVGPGG RVTGVREYCN TALVVTRLGG GGAAVERAKA TCSLSPSPSK QVWQSRLPDR
101: ARRNLPGLVL AI
101: ARRNLPGLVL AI
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.