Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- vacuole 2
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g048820.1.1 | Tomato | cytosol | 45.54 | 89.81 |
| PGSC0003DMT400046104 | Potato | cytosol | 35.21 | 66.96 |
| CDX73898 | Canola | extracellular | 27.7 | 56.73 |
| Bra034157.1-P | Field mustard | extracellular | 27.23 | 55.77 |
| CDY00710 | Canola | extracellular | 27.23 | 55.77 |
| KRG97665 | Soybean | cytosol | 40.85 | 55.06 |
| KRH31209 | Soybean | cytosol | 42.72 | 52.91 |
| CDY00985 | Canola | cytosol | 41.31 | 51.46 |
| AT3G10985.1 | Thale cress | plastid | 26.29 | 50.91 |
| TraesCS2D01G091300.1 | Wheat | mitochondrion | 23.0 | 50.52 |
| TraesCS2A01G092200.1 | Wheat | mitochondrion | 23.47 | 49.51 |
| TraesCS2B01G107100.1 | Wheat | mitochondrion | 23.0 | 48.51 |
| Bra029887.1-P | Field mustard | cytosol | 40.85 | 46.28 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 25.35 | 45.38 |
| CDY08559 | Canola | cytosol, plasma membrane | 41.78 | 43.2 |
| GSMUA_Achr10P... | Banana | cytosol | 22.07 | 43.12 |
| HORVU2Hr1G015360.4 | Barley | cytosol | 36.62 | 43.09 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 36.15 | 42.08 |
| Zm00001d038029_P001 | Maize | mitochondrion | 22.07 | 41.96 |
| PGSC0003DMT400068444 | Potato | cytosol | 28.64 | 40.67 |
| Os07t0691300-01 | Rice | mitochondrion | 17.84 | 38.38 |
| Zm00001d047696_P001 | Maize | cytosol | 34.74 | 36.45 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 23.0 | 36.3 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 23.47 | 36.23 |
| HORVU2Hr1G015410.2 | Barley | cytosol | 32.39 | 35.75 |
| Os03t0299600-01 | Rice | mitochondrion | 37.09 | 34.65 |
| KXG37021 | Sorghum | cytosol | 33.33 | 33.49 |
| Os05t0342000-00 | Rice | cytosol, plastid | 31.92 | 33.33 |
| Zm00001d022569_P001 | Maize | cytosol | 34.74 | 30.45 |
| Zm00001d028808_P001 | Maize | plastid | 36.62 | 29.77 |
| TraesCS4D01G189800.1 | Wheat | plastid | 37.56 | 29.52 |
| OQU92745 | Sorghum | plastid | 35.21 | 28.74 |
| EES19325 | Sorghum | cytosol | 32.39 | 27.94 |
| OQU92744 | Sorghum | cytosol | 34.74 | 24.58 |
Protein Annotations
| Gene3D:3.10.450.50 | MapMan:35.1 | EMBL:A01609 | EMBL:A01611 | EMBL:A12164 | EMBL:A20297 |
| ProteinID:CAA00183 | ProteinID:CAA00183.1 | ProteinID:CAA00184 | ProteinID:CAA00184.1 | ProteinID:CAA01015 | ProteinID:CAA01015.1 |
| ProteinID:CAA01494 | ProteinID:CAA01494.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | UniProt:M1A8G5 |
| InterPro:NTF2-like_dom_sf | PFAM:PF07107 | EnsemblPlantsGene:PGSC0003DMG400006643 | PGSC:PGSC0003DMG400006643 | EnsemblPlants:PGSC0003DMT400017004 | PANTHER:PTHR33703 |
| PANTHER:PTHR33703:SF4 | SUPFAM:SSF54427 | TMHMM:TMhelix | UniParc:UPI000295F65C | InterPro:Wun1-like | SEG:seg |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006643]
Coordinates
chr6:-:34654430..34655071
Molecular Weight (calculated)
23969.9 Da
IEP (calculated)
6.711
GRAVY (calculated)
0.233
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPLNLNTPY YSPIISKLPF QRPYIFPTSH LFLHYLPYLL LSSFIANNII FCFTELANSQ LTLEETTNKG VVLALYEALS SHDVVQVQKL LASDLEWWFH
101: GPPSHQFLMQ ILTGTAKFDN ASFQFLHKTI DVFGSVVLVE GCDPTRSITW VHAWTVTDGV ITQVREYFNT SLTVTRFGKS DISSITTLHC PSVWESSLPN
201: RVGKSVPGLV LAL
101: GPPSHQFLMQ ILTGTAKFDN ASFQFLHKTI DVFGSVVLVE GCDPTRSITW VHAWTVTDGV ITQVREYFNT SLTVTRFGKS DISSITTLHC PSVWESSLPN
201: RVGKSVPGLV LAL
001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI
101: KPVPGLVLAI
Arabidopsis Description
SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.