CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10985.1	EES01073	AT2G42580.1	19000166
AT3G10985.1	EES02247	AT2G42580.1	19000166
AT3G10985.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G091300.1	Wheat	mitochondrion	35.38	77.32
TraesCS2B01G107100.1	Wheat	mitochondrion	35.85	75.25
TraesCS2A01G092200.1	Wheat	mitochondrion	34.91	73.27
HORVU2Hr1G015360.4	Barley	cytosol	55.66	65.19
Os07t0691300-01	Rice	mitochondrion	29.25	62.63
Zm00001d022569_P001	Maize	cytosol	67.45	58.85
HORVU2Hr1G015410.2	Barley	cytosol	49.06	53.89
GSMUA_Achr10P...	Banana	cytosol	25.0	48.62
KRG97665	Soybean	cytosol	34.43	46.2
CDY00710	Canola	extracellular	22.17	45.19
CDX73898	Canola	extracellular	22.17	45.19
Bra034157.1-P	Field mustard	extracellular	21.7	44.23
PGSC0003DMT400046104	Potato	cytosol	23.11	43.75
AT3G10985.1	Thale cress	plastid	22.64	43.64
Solyc06g050760.1.1	Tomato	cytosol	23.58	43.48
OQU92745	Sorghum	plastid	52.83	42.91
KRH17129	Soybean	cytosol	32.08	42.5
KRH31209	Soybean	cytosol	34.43	42.44
GSMUA_Achr6P15760_001	Banana	cytosol	23.58	42.02
KRH30153	Soybean	cytosol	28.77	41.5
CDY00985	Canola	cytosol	33.02	40.94
KRG98193	Soybean	cytosol	30.66	39.88
Solyc06g048820.1.1	Tomato	cytosol	20.28	39.81
Bra029887.1-P	Field mustard	cytosol	33.02	37.23
OQU92744	Sorghum	cytosol	52.36	36.88
VIT_06s0004g07550.t01	Wine grape	extracellular, vacuole	37.74	35.87
CDY08559	Canola	cytosol, plasma membrane	34.43	35.44
PGSC0003DMT400017004	Potato	extracellular, plasma membrane, plastid	33.49	33.33
EES19325	Sorghum	cytosol	38.68	33.2

Protein Annotations

EnsemblPlants:KXG37021	EnsemblPlantsGene:SORBI_3002G427900	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf	InterPro:Wun1-like	PANTHER:PTHR33703
PFAM:PF07107	ProteinID:KXG37021	ProteinID:KXG37021.1	SEG:seg	SUPFAM:SSF54427	UniParc:UPI00081ABC28
UniProt:A0A1B6QGH1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:77432284..77434097

Molecular Weight (calculated)

22902.2 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.098

Length

212 amino acids

Sequence
(BLAST)

001: MELHFDLFAL DALDAHAQEI NCGMCRELAA STASKLERAA PVRGATAGEG DEIGIDPGNE TPEQRNKFLV LRLYEALNAR DHAAVQSLLA PDLEWWFHGP
101: PKHQHMMRLL TGGGGSSGGF RFVPRSVDAL VAPTPTTSTT VIAEGHEGRC YWVHAWTVGA DGVITQLREY FNTDLTVTRL AAVAVAASAK CVWQSRRPDS
201: ATNSLPGLLL AL

Best Arabidopsis Sequence Match ( AT5G01740.1 )
(BLAST)

001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI

Arabidopsis Description

AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.