Factsheet for VIT_06s0004g07550.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G091300.1	Wheat	mitochondrion	23.77	54.64
TraesCS2B01G107100.1	Wheat	mitochondrion	23.32	51.49
TraesCS2A01G092200.1	Wheat	mitochondrion	23.32	51.49
KRH30153	Soybean	cytosol	33.18	50.34
KRH17129	Soybean	cytosol	34.98	48.75
KRG98193	Soybean	cytosol	34.53	47.24
GSMUA_Achr10P...	Banana	cytosol	22.42	45.87
HORVU2Hr1G015360.4	Barley	cytosol	35.43	43.65
GSMUA_Achr6P15760_001	Banana	cytosol	22.87	42.86
Os07t0691300-01	Rice	mitochondrion	18.83	42.42
TraesCS4B01G188400.1	Wheat	cytosol	33.18	40.44
VIT_08s0058g00800.t01	Wine grape	cytosol	28.7	40.25
Zm00001d038029_P001	Maize	mitochondrion	19.73	39.29
Zm00001d047696_P001	Maize	cytosol	34.98	38.42
KXG37021	Sorghum	cytosol	35.87	37.74
Os03t0299600-01	Rice	mitochondrion	38.56	37.72
TraesCS4A01G115600.1	Wheat	mitochondrion	22.42	37.04
HORVU4Hr1G054970.1	Barley	cytosol	22.87	36.96
HORVU2Hr1G015410.2	Barley	cytosol	31.84	36.79
Zm00001d022569_P001	Maize	cytosol	35.87	32.92
Os05t0342000-00	Rice	cytosol, plastid	29.6	32.35
OQU92745	Sorghum	plastid	35.87	30.65
TraesCS4D01G189800.1	Wheat	plastid	37.22	30.63
Zm00001d028808_P001	Maize	plastid	33.63	28.63
EES19325	Sorghum	cytosol	31.39	28.34
OQU92744	Sorghum	cytosol	36.32	26.91

Protein Annotations

ArrayExpress:VIT_06s0004g07550	EMBL:FN594951	EnsemblPlants:VIT_06s0004g07550.t01	EnsemblPlantsGene:VIT_06s0004g07550	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf
InterPro:Wun1-like	PANTHER:PTHR33703	PANTHER:PTHR33703:SF4	PFAM:PF07107	ProteinID:CCB43428	ProteinID:CCB43428.1
RefSeq:XP_002277465	RefSeq:XP_002277465.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF54427	TIGR:TC67594
unigene:Vvi.12633	UniParc:UPI000210AC2D	UniProt:F6GUH4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:-:8313240..8314298

Molecular Weight (calculated)

24807.2 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.130

Length

223 amino acids

Sequence
(BLAST)

001: MQTKLPLSSL PLFFFWVLTH YPHLSHSQYI YREDETQPQF SSAILHCHKP TPAGVSELAH TEAALEESSK RVVGALYEAL STRDVETVHQ LLAPDLEWWF
101: HGPPNHQHLM QLLTGSSSSD DPFHFDPVSI VAFGSTVLVE GYEERRSVAW VHAWVVTDGI ITQVREYFNT SVTVTRLSNT DKAAEGPSTS TTAARSVPCT
201: CVWQSKVCES MGKSVPGLLL ALQ

Best Arabidopsis Sequence Match ( AT5G01740.1 )
(BLAST)

001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI

Arabidopsis Description

AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.