Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G054970.1 | Barley | cytosol | 41.38 | 60.87 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 39.41 | 59.26 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 52.22 | 57.92 |
| GSMUA_Achr10P... | Banana | cytosol | 29.56 | 55.05 |
| Zm00001d038029_P001 | Maize | mitochondrion | 29.56 | 53.57 |
| OQU92745 | Sorghum | plastid | 68.47 | 53.26 |
| Os03t0299600-01 | Rice | mitochondrion | 59.61 | 53.07 |
| Zm00001d028808_P001 | Maize | plastid | 67.0 | 51.91 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 29.56 | 50.42 |
| KRG97665 | Soybean | cytosol | 38.92 | 50.0 |
| Bra034157.1-P | Field mustard | extracellular | 25.12 | 49.04 |
| CDX73898 | Canola | extracellular | 25.12 | 49.04 |
| CDY00710 | Canola | extracellular | 25.12 | 49.04 |
| OQU92744 | Sorghum | cytosol | 70.44 | 47.51 |
| KRH31209 | Soybean | cytosol | 39.41 | 46.51 |
| PGSC0003DMT400046104 | Potato | cytosol | 25.62 | 46.43 |
| Solyc06g050760.1.1 | Tomato | cytosol | 26.11 | 46.09 |
| AT3G10985.1 | Thale cress | plastid | 24.63 | 45.45 |
| TraesCS4D01G189800.1 | Wheat | plastid | 60.1 | 45.02 |
| KRH30153 | Soybean | cytosol | 32.51 | 44.9 |
| CDY00985 | Canola | cytosol | 37.44 | 44.44 |
| Solyc06g048820.1.1 | Tomato | cytosol | 23.15 | 43.52 |
| KRG98193 | Soybean | cytosol | 33.99 | 42.33 |
| KRH17129 | Soybean | cytosol | 32.51 | 41.25 |
| Zm00001d022569_P001 | Maize | cytosol | 49.26 | 41.15 |
| Bra029887.1-P | Field mustard | cytosol | 37.44 | 40.43 |
| CDY08559 | Canola | cytosol, plasma membrane | 37.44 | 36.89 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 38.42 | 34.98 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 36.45 | 34.74 |
Protein Annotations
| EMBL:BT034449 | EnsemblPlants:Zm00001d047696_P001 | EnsemblPlants:Zm00001d047696_T001 | EnsemblPlantsGene:Zm00001d047696 | EntrezGene:100192467 | Gene3D:3.10.450.50 |
| InterPro:NTF2-like_dom_sf | InterPro:Wun1-like | PANTHER:PTHR33703 | PANTHER:PTHR33703:SF4 | PFAM:PF07107 | ProteinID:AQL07312.1 |
| SEG:seg | SUPFAM:SSF54427 | UniParc:UPI00017B6901 | UniProt:B4FBG1 | MapMan:35.2 | : |
Description
senescence associated gene 20
Coordinates
chr9:+:139410272..139410883
Molecular Weight (calculated)
21576.3 Da
IEP (calculated)
9.215
GRAVY (calculated)
-0.344
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPTRQELA EAALAGESAE QRNRFLVLRL YEALGSCDAR RARKLLAPDL EWWFHGPPTR QHMMRLLTGA DHQRHMSGGG GGGFAFSPRS VDAFGSTVVA
101: EGGADDARQL YWVHAWTVGP DGVITQLREY FNTDLTVTLL AGTASAKKAA PPKKQQDAAS SSTSSSSPPS AASSSAAAGS KCLWQSRRAD SAHKSLPGLV
201: LAI
101: EGGADDARQL YWVHAWTVGP DGVITQLREY FNTDLTVTLL AGTASAKKAA PPKKQQDAAS SSTSSSSPPS AASSSAAAGS KCLWQSRRAD SAHKSLPGLV
201: LAI
001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
Arabidopsis Description
AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.