CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10985.1	CDY42827	AT2G42580.1	19000166
AT3G10985.1	CDY51514	AT2G42580.1	19000166
AT3G10985.1	CDY55390	AT2G42580.1	19000166
AT3G10985.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73898	Canola	extracellular	98.08	98.08
Bra034157.1-P	Field mustard	extracellular	90.38	90.38
AT3G10985.1	Thale cress	plastid	78.85	74.55
Solyc06g050760.1.1	Tomato	cytosol	60.58	54.78
Solyc06g048820.1.1	Tomato	cytosol	55.77	53.7
TraesCS2D01G091300.1	Wheat	mitochondrion	50.0	53.61
PGSC0003DMT400046104	Potato	cytosol	57.69	53.57
CDY00985	Canola	cytosol	86.54	52.63
TraesCS2B01G107100.1	Wheat	mitochondrion	50.96	52.48
TraesCS2A01G092200.1	Wheat	mitochondrion	48.08	49.51
GSMUA_Achr10P...	Banana	cytosol	50.96	48.62
GSMUA_Achr6P15760_001	Banana	cytosol	52.88	46.22
CDY08559	Canola	cytosol, plasma membrane	85.58	43.2
Zm00001d038029_P001	Maize	mitochondrion	45.19	41.96
KRG97665	Soybean	cytosol	60.58	39.87
Os07t0691300-01	Rice	mitochondrion	37.5	39.39
TraesCS4A01G115600.1	Wheat	mitochondrion	50.0	38.52
HORVU4Hr1G054970.1	Barley	cytosol	50.0	37.68
KRH31209	Soybean	cytosol	59.62	36.05
HORVU2Hr1G015360.4	Barley	cytosol	49.04	28.18
TraesCS4B01G188400.1	Wheat	cytosol	48.08	27.32
PGSC0003DMT400017004	Potato	extracellular, plasma membrane, plastid	55.77	27.23
CDY04831	Canola	cytosol	40.38	26.25
Zm00001d047696_P001	Maize	cytosol	49.04	25.12
Os03t0299600-01	Rice	mitochondrion	51.92	23.68
Os05t0342000-00	Rice	cytosol, plastid	45.19	23.04
HORVU2Hr1G015410.2	Barley	cytosol	41.35	22.28
KXG37021	Sorghum	cytosol	45.19	22.17
EES19325	Sorghum	cytosol	48.08	20.24
TraesCS4D01G189800.1	Wheat	plastid	51.92	19.93
OQU92745	Sorghum	plastid	50.0	19.92
Zm00001d028808_P001	Maize	plastid	49.04	19.47
Zm00001d022569_P001	Maize	cytosol	45.19	19.34
OQU92744	Sorghum	cytosol	50.0	17.28

Protein Annotations

EnsemblPlants:CDY00710	EnsemblPlantsGene:GSBRNA2T00110557001	InterPro:NTF2-like_dom_sf	InterPro:Wound-induced_1/12_sub	InterPro:Wun1-like	PANTHER:PTHR33703
PANTHER:PTHR33703:SF11	PFAM:PF07107	PIRSF:PIRSF007948	ProteinID:CDY00710	ProteinID:CDY00710.1	SUPFAM:SSF54427
UniParc:UPI0004EED4FD	MapMan:35.1	:	:	:	:

Description

BnaC03g36940D

Coordinates

chrLK031921:+:401588..406778

Molecular Weight (calculated)

10979.1 Da

IEP (calculated)

6.221

GRAVY (calculated)

0.499

Length

104 amino acids

Sequence
(BLAST)

001: MRTLTGVSPT FEFVPLSVVS FGSTVIAEGC DVASSISWIH AWTVAHGIIT QVREYSNTSL TVTRVGDVVA GWSAEIAPSH CLSVWESQFS GRAGKSVPGL
101: VLAI

Best Arabidopsis Sequence Match ( AT3G10985.1 )
(BLAST)

001: MRVLTGGVSP SSSSFEFVPL SVVSFGSTVI AEGCDAATSI SWIHAWTVAN GIITQVREYS NTSLTVTRIG NVVAGRRSAE IAPPSHCSSV WESQFSGRAG
101: KPVPGLVLAI

Arabidopsis Description

SAG20Senescence associated gene 20 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.