CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10985.1	EES01073	AT2G42580.1	19000166
AT3G10985.1	EES02247	AT2G42580.1	19000166
AT3G10985.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047696_P001	Maize	cytosol	53.26	68.47
TraesCS4A01G115600.1	Wheat	mitochondrion	31.8	61.48
HORVU4Hr1G054970.1	Barley	cytosol	32.18	60.87
TraesCS4B01G188400.1	Wheat	cytosol	42.53	60.66
OQU92744	Sorghum	cytosol	68.2	59.14
Zm00001d028808_P001	Maize	plastid	57.85	57.63
Os03t0299600-01	Rice	mitochondrion	49.43	56.58
GSMUA_Achr10P...	Banana	cytosol	22.61	54.13
KXG37021	Sorghum	cytosol	42.91	52.83
TraesCS4D01G189800.1	Wheat	plastid	53.26	51.29
GSMUA_Achr6P15760_001	Banana	cytosol	22.99	50.42
Bra034157.1-P	Field mustard	extracellular	19.92	50.0
CDX73898	Canola	extracellular	19.92	50.0
CDY00710	Canola	extracellular	19.92	50.0
KRG97665	Soybean	cytosol	29.89	49.37
Solyc06g050760.1.1	Tomato	cytosol	21.46	48.7
PGSC0003DMT400046104	Potato	cytosol	20.69	48.21
KRH31209	Soybean	cytosol	30.27	45.93
AT3G10985.1	Thale cress	plastid	19.16	45.45
CDY00985	Canola	cytosol	29.12	44.44
Solyc06g048820.1.1	Tomato	cytosol	18.39	44.44
KRH30153	Soybean	cytosol	24.9	44.22
KRH17129	Soybean	cytosol	26.05	42.5
KRG98193	Soybean	cytosol	26.44	42.33
Bra029887.1-P	Field mustard	cytosol	29.12	40.43
CDY08559	Canola	cytosol, plasma membrane	29.5	37.38
VIT_06s0004g07550.t01	Wine grape	extracellular, vacuole	30.65	35.87
PGSC0003DMT400017004	Potato	extracellular, plasma membrane, plastid	28.74	35.21
EES19325	Sorghum	cytosol	32.18	34.01

Protein Annotations

EnsemblPlants:OQU92745	EnsemblPlantsGene:SORBI_3001G401975	Gene3D:3.10.450.50	InterPro:NTF2-like_dom_sf	InterPro:Wun1-like	PANTHER:PTHR33703
PANTHER:PTHR33703:SF4	PFAM:PF07107	ProteinID:OQU92745	ProteinID:OQU92745.1	SEG:seg	SUPFAM:SSF54427
UniParc:UPI000B8BAC5A	UniProt:A0A1Z5SAI2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:68750468..68751677

Molecular Weight (calculated)

28339.2 Da

IEP (calculated)

10.423

GRAVY (calculated)

-0.437

Length

261 amino acids

Sequence
(BLAST)

001: PDLHRVLVST HFRCRVRSST VSQSHSLERS GARIGSESLR ARRSRQELAT PRGRQGAASP RPHETAELDA AEASAFVAGE SAEQRNRFLV LWLYEALNAR
101: DARRAQELLA PDLEWWFHGP PTRQHMMRLL TGADQRDKSR GGGGVGFVFS PRSVDAFGST VIAEGADDAR QLYWVHAWTV GPDGVITQLR EYFNTDLTVT
201: LLSGAAASAK KADIAGAPRK QQDAASSSFS SPSAAAGPKC LWQSRRGDSA HKSLPGLVLA I

Best Arabidopsis Sequence Match ( AT5G01740.1 )
(BLAST)

001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI

Arabidopsis Description

AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.