Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047696_P001 | Maize | cytosol | 51.91 | 67.0 |
| OQU92745 | Sorghum | plastid | 57.63 | 57.85 |
| TraesCS4B01G188400.1 | Wheat | cytosol | 40.08 | 57.38 |
| HORVU4Hr1G054970.1 | Barley | cytosol | 30.15 | 57.25 |
| TraesCS4A01G115600.1 | Wheat | mitochondrion | 29.01 | 56.3 |
| Os03t0299600-01 | Rice | mitochondrion | 48.85 | 56.14 |
| GSMUA_Achr10P... | Banana | cytosol | 22.14 | 53.21 |
| OQU92744 | Sorghum | cytosol | 57.63 | 50.17 |
| CDX73898 | Canola | extracellular | 19.85 | 50.0 |
| TraesCS4D01G189800.1 | Wheat | plastid | 51.15 | 49.45 |
| Zm00001d038029_P001 | Maize | mitochondrion | 20.99 | 49.11 |
| Bra034157.1-P | Field mustard | extracellular | 19.47 | 49.04 |
| CDY00710 | Canola | extracellular | 19.47 | 49.04 |
| GSMUA_Achr6P15760_001 | Banana | cytosol | 21.76 | 47.9 |
| KRG97665 | Soybean | cytosol | 28.24 | 46.84 |
| Solyc06g050760.1.1 | Tomato | cytosol | 20.23 | 46.09 |
| PGSC0003DMT400046104 | Potato | cytosol | 19.47 | 45.54 |
| AT3G10985.1 | Thale cress | plastid | 18.7 | 44.55 |
| Solyc06g048820.1.1 | Tomato | cytosol | 17.94 | 43.52 |
| CDY00985 | Canola | cytosol | 28.24 | 43.27 |
| KRH31209 | Soybean | cytosol | 28.24 | 43.02 |
| Zm00001d022569_P001 | Maize | cytosol | 39.69 | 42.8 |
| KRH30153 | Soybean | cytosol | 22.52 | 40.14 |
| KRH17129 | Soybean | cytosol | 24.05 | 39.38 |
| Bra029887.1-P | Field mustard | cytosol | 27.86 | 38.83 |
| KRG98193 | Soybean | cytosol | 23.28 | 37.42 |
| PGSC0003DMT400017004 | Potato | extracellular, plasma membrane, plastid | 29.77 | 36.62 |
| CDY08559 | Canola | cytosol, plasma membrane | 27.86 | 35.44 |
| VIT_06s0004g07550.t01 | Wine grape | extracellular, vacuole | 28.63 | 33.63 |
Protein Annotations
| EnsemblPlants:Zm00001d028808_P001 | EnsemblPlants:Zm00001d028808_T001 | EnsemblPlantsGene:Zm00001d028808 | Gene3D:3.10.450.50 | InterPro:NTF2-like_dom_sf | InterPro:Wun1-like |
| PANTHER:PTHR33703 | PANTHER:PTHR33703:SF4 | PFAM:PF07107 | ProteinID:ONL97071.1 | SEG:seg | SUPFAM:SSF54427 |
| UniParc:UPI0002213CDE | UniProt:A0A1D6JZR2 | MapMan:35.1 | : | : | : |
Description
senescence associated gene 20
Coordinates
chr1:-:47025643..47026431
Molecular Weight (calculated)
28361.6 Da
IEP (calculated)
9.054
GRAVY (calculated)
-0.297
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNVTLLYPY IKHPTHTQSI QASTASSAPL LPSPSIALTR SHSHPRRLAV SAAEPLERRP RQELATPRPG LGAAPPRPHE TAELDAEAAL GGESAEERNR
101: FLVLRLYEAL NARDARRAQE LLAPDLEWWF HGPPARQHMM RLLTGALDHR GFVFSPRSVD AFGSTVVAEG ADDARQLYWV HAWTVGPHGV ITQLREYFNT
201: DLTLLSGQPD VVAAGAAPPK QKDAASSSSP SVAAPAAGPK CLWQSRRADS AHKSLPGLVL AI
101: FLVLRLYEAL NARDARRAQE LLAPDLEWWF HGPPARQHMM RLLTGALDHR GFVFSPRSVD AFGSTVVAEG ADDARQLYWV HAWTVGPHGV ITQLREYFNT
201: DLTLLSGQPD VVAAGAAPPK QKDAASSSSP SVAAPAAGPK CLWQSRRADS AHKSLPGLVL AI
001: MEAHNVEIST RLTPEMKNQG TIELLYKALQ QGDTSTVTKV VASDVEWWFH GPHDCQHMMR LLTGEPPRQV SFRFEPSSVQ VVVPGHDCVI AEGWEGSRVY
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
101: WVHVWKLKDG VVTELREYFN TWLTVTDYSL GAVGWDMGRC TVWESVPRDL ARGSLPSLLL AI
Arabidopsis Description
AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.