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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol

Predictor Summary:
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome
Any Predictor:cytosol, peroxisome
MultiLoc:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G69420.1 HORVU1Hr1G093390.2 AT2G42580.1 19000166
AT1G69420.1 HORVU3Hr1G027650.2 AT2G42580.1 19000166
AT1G69420.1 HORVU3Hr1G054240.2 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G252500.1 Wheat plasma membrane 68.64 83.08
TraesCS4D01G252800.1 Wheat plasma membrane 67.37 81.4
TraesCS4A01G051700.1 Wheat plasma membrane 67.23 81.23
GSMUA_Achr4P10850_001 Banana extracellular 3.39 72.73
Os03t0209500-01 Rice endoplasmic reticulum, golgi, plasma membrane 59.89 70.9
KXG39903 Sorghum plasma membrane 58.05 67.93
GSMUA_Achr10P... Banana plasma membrane 35.59 59.86
GSMUA_Achr5P16110_001 Banana plasma membrane 22.18 56.68
CDX95936 Canola plasma membrane 42.66 54.71
Zm00001d028039_P004 Maize plasma membrane, plastid 58.9 54.58
GSMUA_Achr6P07830_001 Banana endoplasmic reticulum, golgi, plasma membrane 47.18 53.53
CDY40920 Canola plasma membrane 42.94 52.69
HORVU2Hr1G034630.4 Barley plasma membrane 45.48 52.61
HORVU3Hr1G033580.1 Barley plasma membrane 11.72 51.55
KRH74943 Soybean plasma membrane 44.92 51.04
CDY44067 Canola plasma membrane 40.96 50.97
Bra004380.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 42.94 50.92
AT1G69420.1 Thale cress plasma membrane 42.66 50.67
KRH70813 Soybean plasma membrane 44.49 50.4
CDY28549 Canola plasma membrane 40.54 50.26
VIT_01s0113g00420.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 44.49 49.84
Bra038305.1-P Field mustard plasma membrane 40.96 49.24
CDY51503 Canola plasma membrane 40.68 49.06
KRG89539 Soybean endoplasmic reticulum, golgi, plasma membrane 42.66 48.55
PGSC0003DMT400072839 Potato plasma membrane 43.08 48.41
Solyc05g012790.2.1 Tomato plasma membrane 42.09 47.3
HORVU4Hr1G060520.1 Barley endoplasmic reticulum, plasma membrane, vacuole 12.57 47.09
KRH50551 Soybean plasma membrane 41.38 47.03
CDY07350 Canola plasma membrane 37.85 46.61
Bra004000.1-P Field mustard cytosol, nucleus, plasma membrane 33.33 42.91
GSMUA_Achr5P16100_001 Banana endoplasmic reticulum, extracellular, plasma membrane 15.25 37.63
GSMUA_Achr4P10840_001 Banana extracellular, mitochondrion, plasma membrane, plastid 11.86 35.15
CDX84493 Canola cytosol 6.78 34.78
HORVU2Hr1G104880.6 Barley golgi 25.85 29.76
HORVU5Hr1G090020.3 Barley endoplasmic reticulum, plasma membrane 25.99 26.17
HORVU7Hr1G058360.1 Barley nucleus, peroxisome 24.86 24.79
HORVU7Hr1G085240.2 Barley peroxisome 18.5 22.86
Protein Annotations
EnsemblPlants:HORVU4Hr1G069190.5EnsemblPlantsGene:HORVU4Hr1G069190GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0016020
GO:GO:0016021GO:GO:0016740GO:GO:0016746GO:GO:0019706InterPro:Palmitoyltrfase_DHHCPANTHER:PTHR22883
PANTHER:PTHR22883:SF105PFAM:PF01529PFscan:PS50216SEG:segTMHMM:TMhelixUniParc:UPI000B47E4BA
UniProt:A0A287PI87MapMan:35.1::::
Description
S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A287PI87]
Coordinates
chrchr4H:+:569007616..569012856
Molecular Weight (calculated)
77550.5 Da
IEP (calculated)
8.430
GRAVY (calculated)
-0.257
Length
708 amino acids
Sequence
(BLAST)
001: LPPLHSPPRD ETAHALDAVL IPSPLLPLHY RSIIGGRPAK PPFHPLPRPK NKQTSSKNQT FFVAPRPLWS CLLRAGAERS PAFRKGESEP GWSCSRPLGS
101: PGQTLPSPSS SSPAPRRRNR SEAMRKHGWQ LPYHPLQVVA IAVFAALGFA FYVFFLPFVG SQTSQYVAMG LYTPLITCVV TLYIWCAATN PGDPGICRST
201: RHSRLDKDGR QSHSHSHMDS GHGLHAADNS EKLSSMLERK DSPSWLRCSQ VLCLVCLPFS CLCKGCLHPD DQHSEENMSE EGMFFCSLCE AEVLKNSKHC
301: RVCDKCVDGF DHHCRWLNNC IGKRNYKGFF ILMSSAVLLV VVQWLSGTLV IILCIVKRGD FSRQIDSKLG SSFSTVAFVI VVATCTILAM IATVPLAQLL
401: CFHILLIKKG ISTYDYIIAL REQEEDQQEE VAGHQSPQMS IISSVTGFST ASSFGPLHRG SWCTPPRLFL EDQFDVIPPE IGMSQNPGSK KMKVLEGARR
501: RNGTVKISPW TLARLNAEEV SKAAAQAKKK SKILKPIARQ DPPIIHDNRR GRFPAELSLD PLARLSASGT ESNFSDGAME ASASLAPLQL EARSAFQPST
601: AASSRIAVSS PESSFDSPDL HPFRVSSCTA DEMLGGTPHA AQSHIEFTRS TSDGYEASGG EDSDRIPSRI VHRSSNWANS LLHSGQAGPT TDQHMPSSEG
701: FLNNSRSS
Best Arabidopsis Sequence Match ( AT1G69420.1 )
(BLAST)
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
Arabidopsis Description
PAT22S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178WF77]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.