Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P07830_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 49.13 | 22.6 |
| VIT_01s0113g00420.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 49.13 | 22.31 |
| EER99646 | Sorghum | plasma membrane | 41.46 | 19.29 |
| TraesCS2D01G191000.1 | Wheat | plasma membrane | 40.77 | 19.15 |
| TraesCS2B01G209800.1 | Wheat | golgi | 40.42 | 18.95 |
| HORVU2Hr1G034630.4 | Barley | plasma membrane | 40.42 | 18.95 |
| TraesCS2A01G183200.1 | Wheat | plasma membrane | 39.72 | 18.63 |
| TraesCS4D01G252800.1 | Wheat | plasma membrane | 37.63 | 18.43 |
| Os03t0209500-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 38.33 | 18.39 |
| TraesCS4B01G252500.1 | Wheat | plasma membrane | 36.93 | 18.12 |
| TraesCS4A01G051700.1 | Wheat | plasma membrane | 36.59 | 17.92 |
| Os10t0337500-01 | Rice | plasma membrane | 36.59 | 17.62 |
| KRH70813 | Soybean | plasma membrane | 38.33 | 17.6 |
| KRH74943 | Soybean | plasma membrane | 37.98 | 17.5 |
| CDX95936 | Canola | plasma membrane | 33.45 | 17.39 |
| Bra004000.1-P | Field mustard | cytosol, nucleus, plasma membrane | 33.1 | 17.27 |
| KRG89539 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 37.28 | 17.2 |
| Zm00001d006757_P003 | Maize | plasma membrane | 39.72 | 17.01 |
| Zm00001d022038_P007 | Maize | plasma membrane | 40.77 | 16.96 |
| KXG39903 | Sorghum | plasma membrane | 35.54 | 16.86 |
| Solyc05g012790.2.1 | Tomato | plasma membrane | 36.93 | 16.83 |
| PGSC0003DMT400072839 | Potato | plasma membrane | 36.93 | 16.83 |
| AT1G69420.1 | Thale cress | plasma membrane | 34.84 | 16.78 |
| CDY40920 | Canola | plasma membrane | 33.1 | 16.46 |
| CDY44067 | Canola | plasma membrane | 32.4 | 16.34 |
| CDY28549 | Canola | plasma membrane | 32.4 | 16.29 |
| CDY51503 | Canola | plasma membrane | 33.1 | 16.18 |
| Bra004380.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 33.45 | 16.08 |
| KRH50551 | Soybean | plasma membrane | 34.84 | 16.05 |
| Zm00001d030508_P001 | Maize | plasma membrane | 31.71 | 15.58 |
| HORVU4Hr1G069190.5 | Barley | cytosol, peroxisome | 37.63 | 15.25 |
| Bra038305.1-P | Field mustard | plasma membrane | 31.01 | 15.11 |
| CDY07350 | Canola | plasma membrane | 28.57 | 14.26 |
| Zm00001d028039_P004 | Maize | plasma membrane, plastid | 36.24 | 13.61 |
| GSMUA_Achr10P... | Banana | plasma membrane | 14.29 | 9.74 |
| GSMUA_Achr8P33480_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 16.38 | 8.22 |
| GSMUA_Achr11P... | Banana | plasma membrane | 16.72 | 8.16 |
| GSMUA_Achr11P... | Banana | golgi | 16.03 | 7.94 |
| GSMUA_Achr7P03550_001 | Banana | golgi | 15.33 | 7.82 |
| GSMUA_Achr1P19020_001 | Banana | plasma membrane | 11.85 | 7.14 |
| HORVU3Hr1G033580.1 | Barley | plasma membrane | 2.44 | 4.35 |
| HORVU4Hr1G060520.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 2.44 | 3.7 |
| GSMUA_Achr5P16110_001 | Banana | plasma membrane | 3.14 | 3.25 |
| GSMUA_Achr4P10850_001 | Banana | extracellular | 0.35 | 3.03 |
| GSMUA_Achr4P10860_001 | Banana | mitochondrion | 3.48 | 2.68 |
| GSMUA_Achr4P10840_001 | Banana | extracellular, mitochondrion, plasma membrane, plastid | 1.74 | 2.09 |
| Os07t0596000-01 | Rice | plasma membrane | 0.7 | 0.81 |
| CDX84493 | Canola | cytosol | 0.35 | 0.72 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P16100_001 | EnsemblPlants:GSMUA_Achr5T16100_001 | EnsemblPlantsGene:GSMUA_Achr5G16100_001 | PANTHER:PTHR22883 | PANTHER:PTHR22883:SF105 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI0002953326 | UniProt:M0SYY9 | MapMan:35.1 | : | : |
Description
zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G16100_001]
Coordinates
chr5:-:12896310..12897173
Molecular Weight (calculated)
31366.2 Da
IEP (calculated)
9.942
GRAVY (calculated)
-0.409
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLCFLFCF LVMLIWVDEK GSIFFSQFDV VPPKIGTSAN YTSKKMMPEE QVKKRNAGTV KISPWTLAHL NAEEVSKAAA EARKKSKILQ PIVRREVLQG
101: QDAENNIGRI VLRPENPSRT NKRGRIPVDL PLEPLAKVST SATDGNVSDL VPKTSTSLAP LQLEARSAFW PNRPMPSARV IASSPDSSLD SPDLHPFRIS
201: SSGTEEARGL NSISNPGIIP PRGIQRSRST SDGYEASGGE DSDRIPSRIV HRSSNWASIV LGSEHSQIVD DLKASSSASS QLYTRPQ
101: QDAENNIGRI VLRPENPSRT NKRGRIPVDL PLEPLAKVST SATDGNVSDL VPKTSTSLAP LQLEARSAFW PNRPMPSARV IASSPDSSLD SPDLHPFRIS
201: SSGTEEARGL NSISNPGIIP PRGIQRSRST SDGYEASGGE DSDRIPSRIV HRSSNWASIV LGSEHSQIVD DLKASSSASS QLYTRPQ
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
Arabidopsis Description
PAT22S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178WF77]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.