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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G69420.1 Bra000267.1-P AT2G42580.1 19000166
AT1G69420.1 Bra004709.1-P AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX95936 Canola plasma membrane 79.23 85.69
AT1G69420.1 Thale cress plasma membrane 80.07 80.2
Bra038305.1-P Field mustard plasma membrane 77.55 78.61
GSMUA_Achr4P10850_001 Banana extracellular 4.19 75.76
Bra004000.1-P Field mustard cytosol, nucleus, plasma membrane 63.65 69.09
GSMUA_Achr10P... Banana plasma membrane 44.56 63.18
GSMUA_Achr5P16110_001 Banana plasma membrane 28.48 61.37
VIT_01s0113g00420.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 62.98 59.49
KRH70813 Soybean plasma membrane 61.98 59.2
KRH74943 Soybean plasma membrane 61.64 59.07
Bra019236.1-P Field mustard golgi, plasma membrane 8.88 58.89
PGSC0003DMT400072839 Potato plasma membrane 61.64 58.41
Solyc05g012790.2.1 Tomato plasma membrane 58.96 55.87
KRG89539 Soybean endoplasmic reticulum, golgi, plasma membrane 58.12 55.79
HORVU3Hr1G033580.1 Barley plasma membrane 14.41 53.42
KRH50551 Soybean plasma membrane 54.94 52.65
TraesCS4B01G252500.1 Wheat plasma membrane 50.59 51.62
Os07t0596000-01 Rice plasma membrane 21.27 51.21
Os03t0209500-01 Rice endoplasmic reticulum, golgi, plasma membrane 51.26 51.17
GSMUA_Achr6P07830_001 Banana endoplasmic reticulum, golgi, plasma membrane 53.43 51.12
TraesCS4D01G252800.1 Wheat plasma membrane 49.75 50.68
HORVU2Hr1G034630.4 Barley plasma membrane 51.76 50.49
TraesCS2B01G209800.1 Wheat golgi 51.76 50.49
TraesCS4A01G051700.1 Wheat plasma membrane 49.41 50.34
TraesCS2A01G183200.1 Wheat plasma membrane 51.59 50.33
TraesCS2D01G191000.1 Wheat plasma membrane 51.42 50.25
Os10t0337500-01 Rice plasma membrane 48.58 48.66
EER99646 Sorghum plasma membrane 50.08 48.46
HORVU4Hr1G060520.1 Barley endoplasmic reticulum, plasma membrane, vacuole 15.24 48.15
KXG39903 Sorghum plasma membrane 48.74 48.1
Zm00001d030508_P001 Maize plasma membrane 45.06 46.06
Zm00001d022038_P007 Maize plasma membrane 53.1 45.94
Zm00001d006757_P003 Maize plasma membrane 51.42 45.82
HORVU4Hr1G069190.5 Barley cytosol, peroxisome 50.92 42.94
Zm00001d028039_P004 Maize plasma membrane, plastid 49.92 39.01
GSMUA_Achr4P10840_001 Banana extracellular, mitochondrion, plasma membrane, plastid 14.57 36.4
GSMUA_Achr5P16100_001 Banana endoplasmic reticulum, extracellular, plasma membrane 16.08 33.45
Bra021866.1-P Field mustard plasma membrane 28.81 30.71
Bra008555.1-P Field mustard plasma membrane 22.28 26.13
Bra023847.1-P Field mustard plasma membrane 26.47 23.48
Bra039566.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 29.65 21.43
Protein Annotations
EnsemblPlants:Bra004380.1EnsemblPlants:Bra004380.1-PEnsemblPlantsGene:Bra004380GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0016746GO:GO:0019706InterPro:Palmitoyltrfase_DHHC
PANTHER:PTHR22883PANTHER:PTHR22883:SF119PFAM:PF01529PFscan:PS50216SEG:segTMHMM:TMhelix
UniParc:UPI0002541840UniProt:M4CJJ6MapMan:35.1:::
Description
AT1G69420 (E=6e-234) | zinc finger (DHHC type) family protein
Coordinates
chrA07:+:18337711..18340543
Molecular Weight (calculated)
65878.2 Da
IEP (calculated)
8.963
GRAVY (calculated)
-0.182
Length
597 amino acids
Sequence
(BLAST)
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGSKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KVPENGKFPQ SKGSKDGCGG
101: AKSHDSTCVQ DQENGTNTKK LDSSQGSCFL RVLCSPCALI CGCCSGRDES SEQQMSEDGM FYCSLCEVEV YKYSKHCRVC DKCVDRFDHH CRWLNNCIGK
201: RNYRKFFSLM ISAIFLLIMQ WSTGIFVLVL CVLRKNQFSA EIALKLGSSF SLVPFVIVVA VCTLLAMLAT LPLAQLFFFH ILLIKKGIST YDYIVALREQ
301: EQELEAGGGQ QSPQMSMISS FTGLSSASSF NTFHRGAWCT PPRLFLEDQF DVVPPENASV SSYGKKSVVE ERVKKKNQPV KISPWTLARL NAEEVSKAAA
401: EARKKSKIIK PVARRENPFV GLEASSSFGS SGRRNFPAKF EAVNSSNGKH QRRQSKRIRL PAELPLEPLM NVQTRAAIME TSTSSGLGPL QLEARSAFQT
501: SRAMSGSGGG VMVTSSPESS LDSHDIQPFR VSSEAEDSAQ LNGFSSAVGL MSQLRGQQQQ QQSMMMMPLS RSTSDGYDAS GGEDSDQVPS RNIHKSR
Best Arabidopsis Sequence Match ( AT1G69420.2 )
(BLAST)
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
Arabidopsis Description
PAT22S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178WF77]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.