Factsheet for TraesCS4D01G252800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69420.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G69420.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G051700.1	Wheat	plasma membrane	95.73	95.73
TraesCS4B01G252500.1	Wheat	plasma membrane	93.17	93.33
Os03t0209500-01	Rice	endoplasmic reticulum, golgi, plasma membrane	77.13	75.59
GSMUA_Achr4P10850_001	Banana	extracellular	4.1	72.73
KXG39903	Sorghum	plasma membrane	71.84	69.59
HORVU4Hr1G069190.5	Barley	cytosol, peroxisome	81.4	67.37
GSMUA_Achr10P...	Banana	plasma membrane	43.69	60.81
GSMUA_Achr5P16110_001	Banana	plasma membrane	26.28	55.6
CDX95936	Canola	plasma membrane	51.88	55.07
GSMUA_Achr6P07830_001	Banana	endoplasmic reticulum, golgi, plasma membrane	58.36	54.81
TraesCS2D01G191000.1	Wheat	plasma membrane	56.48	54.17
Zm00001d028039_P004	Maize	plasma membrane, plastid	69.45	53.27
KRH74943	Soybean	plasma membrane	56.14	52.81
KRH70813	Soybean	plasma membrane	55.12	51.68
CDY40920	Canola	plasma membrane	50.85	51.65
CDY44067	Canola	plasma membrane	50.0	51.49
CDY28549	Canola	plasma membrane	49.66	50.96
AT1G69420.1	Thale cress	plasma membrane	51.19	50.34
KRG89539	Soybean	endoplasmic reticulum, golgi, plasma membrane	53.07	50.0
VIT_01s0113g00420.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	53.75	49.84
Bra004380.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	50.68	49.75
Bra038305.1-P	Field mustard	plasma membrane	49.15	48.9
CDY51503	Canola	plasma membrane	48.46	48.38
KRH50551	Soybean	plasma membrane	51.37	48.31
Solyc05g012790.2.1	Tomato	plasma membrane	51.54	47.94
PGSC0003DMT400072839	Potato	plasma membrane	51.19	47.62
CDY07350	Canola	plasma membrane	46.08	46.96
Bra004000.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.78	43.45
GSMUA_Achr5P16100_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	18.43	37.63
GSMUA_Achr4P10840_001	Banana	extracellular, mitochondrion, plasma membrane, plastid	15.19	37.24
CDX84493	Canola	cytosol	8.19	34.78
TraesCS2D01G455700.1	Wheat	golgi	31.23	29.8
TraesCS7D01G277000.2	Wheat	golgi	30.03	26.91
TraesCS5D01G375800.1	Wheat	plasma membrane	31.06	26.42
TraesCS7D01G352800.1	Wheat	golgi	21.33	24.22

Protein Annotations

EnsemblPlants:TraesCS4D01G252800.1	EnsemblPlantsGene:TraesCS4D01G252800	InterPro:Palmitoyltrfase_DHHC	PANTHER:PTHR22883	PANTHER:PTHR22883:SF105	PFAM:PF01529
PFscan:PS50216	SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4D:+:421526003..421530327

Molecular Weight (calculated)

64577.1 Da

IEP (calculated)

7.417

GRAVY (calculated)

-0.175

Length

586 amino acids

Sequence
(BLAST)

001: MRKHGWQLPY HPLQVVAIAV FAALGFAFYV FFLPFVGSQT SQYVAMGLYT PLITCVVTLY IWCAATNPGD PGICKSTRPH SRLDKDGRHS HSHSHMDSDH
101: GLHAADNSEK LSSMLERKDS PSWPRCSQLL CLVCLPFSCL FKRCLHPDDQ HSEENMSEEG MFFCSLCEAE VLKNSKHCRV CDKCVDGFDH HCRWLNNCVG
201: KRNYKGFFIL MSSAVLLLVV QWLSGTLVII LCIVKREEFS RQIDSKLGSS FSTVAFVIVV ATCTILAMIA TVPLAQLLCF HILLIKKGIS TYDYIIALRE
301: QEEDQQEEVA GHQSPQMSII SSVTGFSTAS SFGPLHRGSW CTPPRLFLED QFDVIPPEIG MSQNPGSKKM KVPEGARRRN GTVKISPWTL ARLNAEEVSK
401: AAAQAKKKSK ILKPITRQDP PIIHDSRRGR FPAELSLDPL ARLSASGTES NFSDAAMEAS ASLAPLQLEA RSAFQPSTAA SSRIAVSSPE SSFDSPDLHP
501: FRVSSCTADE MLGVMPHAAQ SHIEFTRSTS DGYEASGGED SDRIPSRIVH RSANWANSLL HSGQAGQAPD QHMPSSEGFL NNSRSS

Best Arabidopsis Sequence Match ( AT1G69420.2 )
(BLAST)

001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR

Arabidopsis Description

PAT22S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178WF77]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.