Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G69420.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT1G69420.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P10850_001 | Banana | extracellular | 4.11 | 78.79 |
| KRH74943 | Soybean | plasma membrane | 69.46 | 70.47 |
| KRH70813 | Soybean | plasma membrane | 68.99 | 69.76 |
| PGSC0003DMT400072839 | Potato | plasma membrane | 67.72 | 67.94 |
| KRG89539 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 66.61 | 67.68 |
| Solyc05g012790.2.1 | Tomato | plasma membrane | 66.93 | 67.14 |
| CDY40920 | Canola | plasma membrane | 60.28 | 66.03 |
| CDX95936 | Canola | plasma membrane | 57.12 | 65.4 |
| GSMUA_Achr10P... | Banana | plasma membrane | 43.35 | 65.08 |
| GSMUA_Achr5P16110_001 | Banana | plasma membrane | 28.48 | 64.98 |
| KRH50551 | Soybean | plasma membrane | 62.66 | 63.56 |
| AT1G69420.1 | Thale cress | plasma membrane | 59.81 | 63.42 |
| Bra004380.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 59.49 | 62.98 |
| CDY28549 | Canola | plasma membrane | 56.33 | 62.35 |
| CDY44067 | Canola | plasma membrane | 55.7 | 61.86 |
| Bra038305.1-P | Field mustard | plasma membrane | 57.28 | 61.46 |
| CDY51503 | Canola | plasma membrane | 56.17 | 60.48 |
| GSMUA_Achr6P07830_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 57.75 | 58.49 |
| TraesCS2B01G209800.1 | Wheat | golgi | 55.22 | 57.03 |
| HORVU2Hr1G034630.4 | Barley | plasma membrane | 55.22 | 57.03 |
| Bra004000.1-P | Field mustard | cytosol, nucleus, plasma membrane | 49.53 | 56.91 |
| HORVU3Hr1G033580.1 | Barley | plasma membrane | 14.4 | 56.52 |
| CDY07350 | Canola | plasma membrane | 51.11 | 56.17 |
| TraesCS2D01G191000.1 | Wheat | plasma membrane | 53.16 | 54.99 |
| TraesCS4B01G252500.1 | Wheat | plasma membrane | 50.79 | 54.87 |
| TraesCS2A01G183200.1 | Wheat | plasma membrane | 53.01 | 54.74 |
| TraesCS4A01G051700.1 | Wheat | plasma membrane | 50.47 | 54.44 |
| EER99646 | Sorghum | plasma membrane | 52.69 | 53.97 |
| Os03t0209500-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 50.95 | 53.85 |
| TraesCS4D01G252800.1 | Wheat | plasma membrane | 49.84 | 53.75 |
| KXG39903 | Sorghum | plasma membrane | 50.47 | 52.73 |
| Os10t0337500-01 | Rice | plasma membrane | 49.21 | 52.18 |
| Os07t0596000-01 | Rice | plasma membrane | 20.25 | 51.61 |
| Zm00001d006757_P003 | Maize | plasma membrane | 53.64 | 50.6 |
| Zm00001d030508_P001 | Maize | plasma membrane | 46.52 | 50.34 |
| HORVU4Hr1G060520.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 15.03 | 50.26 |
| Zm00001d022038_P007 | Maize | plasma membrane | 54.43 | 49.86 |
| GSMUA_Achr5P16100_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 22.31 | 49.13 |
| HORVU4Hr1G069190.5 | Barley | cytosol, peroxisome | 49.84 | 44.49 |
| Zm00001d028039_P004 | Maize | plasma membrane, plastid | 51.27 | 42.41 |
| CDX84493 | Canola | cytosol | 8.54 | 39.13 |
| GSMUA_Achr4P10840_001 | Banana | extracellular, mitochondrion, plasma membrane, plastid | 14.56 | 38.49 |
| VIT_18s0122g00920.t01 | Wine grape | plasma membrane | 30.22 | 29.07 |
| VIT_03s0017g01770.t01 | Wine grape | plasma membrane | 31.01 | 26.56 |
| VIT_07s0005g02580.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 18.2 | 26.2 |
Protein Annotations
| EntrezGene:100264317 | wikigene:100264317 | MapMan:35.1 | ProteinID:CCB47608 | ProteinID:CCB47608.1 | UniProt:F6H5W9 |
| EMBL:FN595240 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0019706 | EntrezGene:LOC100264317 | wikigene:LOC100264317 | PFAM:PF01529 |
| PFscan:PS50216 | PANTHER:PTHR22883 | PANTHER:PTHR22883:SF119 | InterPro:Palmitoyltrfase_DHHC | TMHMM:TMhelix | UniParc:UPI00019858DA |
| ArrayExpress:VIT_01s0113g00420 | EnsemblPlantsGene:VIT_01s0113g00420 | EnsemblPlants:VIT_01s0113g00420.t01 | unigene:Vvi.20388 | RefSeq:XP_002268416 | RefSeq:XP_002268416.1 |
| SEG:seg | : | : | : | : | : |
Description
S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:F6H5W9]
Coordinates
chr1:-:13672515..13679123
Molecular Weight (calculated)
69270.0 Da
IEP (calculated)
8.997
GRAVY (calculated)
-0.142
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKM SQYVVMGVYT PLIICVFSLY VWCAAADPAD SGVFKSKKYL KIPDNGKHNR PKESKLGGES
101: TSSINDANAA TTGQKPVDED VLGMNATTGN ITSETERKNA PSNHSSCFTG LLVFIPCAFL CNCSSSQEES SEQQMSEDGM FYCSLCEVEV FKYSKHCRVC
201: DKCVDHFDHH CRWLNNCIGK KNYRQFFALM VSALLLLVLQ WLTGILVLIC CFLERKRFSV DITSKLGSSF SLVPFVIVVA VCTILAMIAT LPLAQLFFFH
301: ILLIKKGIST YDYIIALREQ EQQGVGGQQS PQMSPASSLT GLSSASSFTT FHRGAWCTPP RLFLEDQFDV VPPDTGSVSS LGKKVVGDEP IKKKNPGAVK
401: ISPWTLARLN AEEVSKVAAE ARKKSRILQP VARREAPFGL ETDSSFGSSG RRMVPRPENN RRRTNKRVRL PVELPLEPLT KVSARTVDNN KNDVITETST
501: SLAPLQLEAR SAFRTSRAMS STGGIVASSP ESSLDSPDLH PFRVSSSGAE EARRLTGLSA AGAAAQKGIP LSRSTSDGYE ASGGEDSDRV PSRTVHRLTN
601: WSNFLFNSDP VERVGTLNAS ASSSQANMMR KL
101: TSSINDANAA TTGQKPVDED VLGMNATTGN ITSETERKNA PSNHSSCFTG LLVFIPCAFL CNCSSSQEES SEQQMSEDGM FYCSLCEVEV FKYSKHCRVC
201: DKCVDHFDHH CRWLNNCIGK KNYRQFFALM VSALLLLVLQ WLTGILVLIC CFLERKRFSV DITSKLGSSF SLVPFVIVVA VCTILAMIAT LPLAQLFFFH
301: ILLIKKGIST YDYIIALREQ EQQGVGGQQS PQMSPASSLT GLSSASSFTT FHRGAWCTPP RLFLEDQFDV VPPDTGSVSS LGKKVVGDEP IKKKNPGAVK
401: ISPWTLARLN AEEVSKVAAE ARKKSRILQP VARREAPFGL ETDSSFGSSG RRMVPRPENN RRRTNKRVRL PVELPLEPLT KVSARTVDNN KNDVITETST
501: SLAPLQLEAR SAFRTSRAMS STGGIVASSP ESSLDSPDLH PFRVSSSGAE EARRLTGLSA AGAAAQKGIP LSRSTSDGYE ASGGEDSDRV PSRTVHRLTN
601: WSNFLFNSDP VERVGTLNAS ASSSQANMMR KL
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
Arabidopsis Description
PAT22S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178WF77]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.